PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01721.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HSF
Protein Properties Length: 484aa    MW: 52855.4 Da    PI: 5.0837
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01721.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1062.9e-33281192101
                     HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
    HSF_DNA-bind   2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                     Fl k+ye+++d++ + ++sws ++  sfvv+++ efa ++Lp+yFkhsnf+SF+RQLn+YgF+k++ e+         weF++++F kg+k+ll+
  Pahal.A01721.1  28 FLLKTYEMVDDPSSDAVVSWSdASDGSFVVWNPPEFAARMLPTYFKHSNFSSFIRQLNTYGFRKIDPER---------WEFANEYFVKGQKHLLK 113
                     9********************66669****************************************999.........***************** PP

                     XXXXXX CS
    HSF_DNA-bind  96 kikrkk 101
                      i+r+k
  Pahal.A01721.1 114 IIHRRK 119
                     ****98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.9E-3524112IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004153.9E-5624118IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.26E-3324118IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004473.1E-2928118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-182851IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-186779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.5E-188092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MEVAGARGSG GGGGGGGGGG GGGGPAPFLL KTYEMVDDPS SDAVVSWSDA SDGSFVVWNP  60
PEFAARMLPT YFKHSNFSSF IRQLNTYGFR KIDPERWEFA NEYFVKGQKH LLKIIHRRKP  120
IHSHSHQPGA LPDNERALFE DEIDRLSREK AALQADLWKF NEQHSGAVSQ IEYLERRVLD  180
MEQRQVKMLS FLQQASKNPQ FVSKLTKMAE TSSIFAAVHK KRRLPGLEYS AGAAETTSSF  240
YDDHSSSSRQ EMGNVLNQHF SDKLKLGLCP AMTESNLITL STQSSHEDNG SPHGKHPDCE  300
RPGVECLPLV PQMMELSDTG TSICPSKGQS VSFAAAANDD GLLPCHLNLT LASCSMDVNR  360
SQTSDANGNS VEEEKDGPPE ATAATMEDDD GIRRHGDTQH KASGDSATAA DTTVPPDRDS  420
QQALPPHEEA AAPPVVANDK FWEQFLTERP GCTDAEEASS TLRREDPYED TRSDRRDMGQ  480
LKL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B7e-2151181129Heat shock factor protein 1
5d5v_B7e-2151181129Heat shock factor protein 1
5d5v_D7e-2151181129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0424090.0BT042409.1 Zea mays full-length cDNA clone ZM_BFb0221P10 mRNA, complete cds.
GenBankEU9741540.0EU974154.1 Zea mays clone 441220 heat shock transcription factor like protein mRNA, complete cds.
GenBankKJ7276880.0KJ727688.1 Zea mays clone pUT5627 HSF transcription factor (HSF29) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794095.10.0heat stress transcription factor A-5
SwissprotQ6K6S50.0HSFA5_ORYSJ; Heat stress transcription factor A-5
TrEMBLA0A2S3GP670.0A0A2S3GP67_9POAL; Uncharacterized protein
STRINGSi019082m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP90003241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-103HSF family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]