PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01569.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

GeBP

Protein Properties

Length: 599aa MW: 64055.2 Da PI: 9.6804

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01569.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	34.4	6.3e-11	250	339	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfk.vsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 ++qr w ++De+ +L ++ +++g+ p+ d ++ +v ++++ k + +++ eK+r+LK +++k v++ ++ ske++ ++++ls+ + Pahal.A01569.1 250 RSQRHWGKNDEMKILEAIAAHVKSEGTLPKT--DFIIATVGDRLDRKnCTYQDMYEKVRQLKGRYEKAVST-----GIVPSKEDELQMYKLSEAV 337 689****************9999987765..5689999876267788************99.....6677888899******* PP DUF573 96 Wg 97 Wg Pahal.A01569.1 338 WG 339 *8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	4.1E-15	252	339	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 599 aa Download sequence Send to blast
MVRKRRAPSP PRPPPPPPQD EEESSEGSGS EELEPPSLPP RRMPPPAAAA ADLSEGSDSD 60 SDTDAQAFQL LQVHRSPTKL PPHRISQPES DGDGDGEEGE ASESEPENPE PVVHKAVAAG 120 KSKAEQERKR PAADPAPSGK AKKAKAGAAR AAAAAEATPP GKAKKVKAEA GKAAPEATPA 180 GKAKKGKAEP EKAAPEAAPA RKGKKGKAEP EKAAPEATPS VKGKKGGAEP EKPVALDSSP 240 SSSKSEKSAR SQRHWGKNDE MKILEAIAAH VKSEGTLPKT DFIIATVGDR LDRKNCTYQD 300 MYEKVRQLKG RYEKAVSTGI VPSKEDELQM YKLSEAVWGE KAKEAIAAAT SQNDGAVTKS 360 KKGQANKQKM DGNSKGGTPK EAVTNTANQD GDSQKGSKKG QGIKEKTERD LKSRLSKEAT 420 ATGQPSKSKK RENHNEELNK DAKSGASEDA TTNRTQNGND LAKGKREKTD KGNMDIDRDN 480 LMPKEATAPN QNGGTPTKNK EGKTHDEEIE RDANVQGMRR GFDELQTLYS NLAAYVVEIE 540 AQHPCGETLK RAFEFIGDEK AQSLESKVKK QRVDEAKAQI RRADVKKDVL NTLMSLVD*

Sequence ? help Back to Top

Protein Sequence Length: 599 aa Download sequence Send to blast

MVRKRRAPSP PRPPPPPPQD EEESSEGSGS EELEPPSLPP RRMPPPAAAA ADLSEGSDSD  60
SDTDAQAFQL LQVHRSPTKL PPHRISQPES DGDGDGEEGE ASESEPENPE PVVHKAVAAG  120
KSKAEQERKR PAADPAPSGK AKKAKAGAAR AAAAAEATPP GKAKKVKAEA GKAAPEATPA  180
GKAKKGKAEP EKAAPEAAPA RKGKKGKAEP EKAAPEATPS VKGKKGGAEP EKPVALDSSP  240
SSSKSEKSAR SQRHWGKNDE MKILEAIAAH VKSEGTLPKT DFIIATVGDR LDRKNCTYQD  300
MYEKVRQLKG RYEKAVSTGI VPSKEDELQM YKLSEAVWGE KAKEAIAAAT SQNDGAVTKS  360
KKGQANKQKM DGNSKGGTPK EAVTNTANQD GDSQKGSKKG QGIKEKTERD LKSRLSKEAT  420
ATGQPSKSKK RENHNEELNK DAKSGASEDA TTNRTQNGND LAKGKREKTD KGNMDIDRDN  480
LMPKEATAPN QNGGTPTKNK EGKTHDEEIE RDANVQGMRR GFDELQTLYS NLAAYVVEIE  540
AQHPCGETLK RAFEFIGDEK AQSLESKVKK QRVDEAKAQI RRADVKKDVL NTLMSLVD*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824313.1	0.0	recombination repair protein 1-like
TrEMBL	A0A270R5S6	0.0	A0A270R5S6_9POAL; Uncharacterized protein
STRING	Pavir.Ab01142.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7289	27	37

Link Out ? help Back to Top
Phytozome	Pahal.A01569.1