PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01509.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 305aa    MW: 32269.8 Da    PI: 9.8316
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01509.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.81.7e-1276118855
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      Err R+r+N+++  Lr+++P+      +K++Ka++Le A+eYI +Lq
  Pahal.A01509.1  76 TERRCRRRLNDRLYALRRVVPNI-----TKMDKASVLEDAIEYILQLQ 118
                     69********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.93268117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-1374123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-1575132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-1575136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-1076118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.05E-784115No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MDPTMGDSLE CLLWDCLDSE ALQSLCIGAD GDGGAVAGDG GQQHRDGYSS VPDAGSNSSA  60
ATAGAGSIGS SVVVVTERRC RRRLNDRLYA LRRVVPNITK MDKASVLEDA IEYILQLQQL  120
ERQLLAELAL LEAAAGAHHL CSARQCRPPA RGDDGRASHA AVSPTKRTKR NPSFSSLAAS  180
RPPRSLFAAG RRSAGAYVRV SGAGDKVLVV SVACRHRRDA VAKLCRALEG LRLRVIAANV  240
TAASGTVTHT ALVQQVAPGR GRAFLEYDAC TALICSSHVS RSSLRLTRGR FSDGKLLLWL  300
QRGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18087RRRLNDRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452037.11e-79transcription factor bHLH35 isoform X1
TrEMBLA0A3L6RTN12e-98A0A3L6RTN1_PANMI; Uncharacterized protein
STRINGPavir.Aa02630.1.p1e-97(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-21bHLH family protein