PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01414.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

NAC

Protein Properties

Length: 354aa MW: 39074.4 Da PI: 7.2852

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01414.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.9	3.4e-52	10	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeek.ewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL+ ++ ++ + ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++ Pahal.A01414.1 10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKDrcRIGTGPQdEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAI 103 69**************************.9***********943455444445******************************** PP NAM 93 lsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + g+++gl+ktLvfy+grap+g+ktdW+mheyrl Pahal.A01414.1 104 FLGnAGRKIGLRKTLVFYTGRAPHGKKTDWIMHEYRL 140 99767899*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.06E-58	7	162	IPR003441	NAC domain
PROSITE profile	PS51005	58.937	10	162	IPR003441	NAC domain
Pfam	PF02365	1.6E-27	11	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MYPSCSPLTV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR 60 IGTGPQDEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNAGR KIGLRKTLVF 120 YTGRAPHGKK TDWIMHEYRL DDDNAEVPIT EEGWVVCRVF MKKSIQRGFD QQGVVAAGDD 180 DELQSFHHSP GGATPPVDQK LGLHQFMHGC FPAFDPSMHL PHLTSAEAAP LGAPAFMSGT 240 PPAAAVNPLD MGSAPHNLAK LTASCRTAGD MLLNGADRFG AAGADWSILD KLLVSHQNLD 300 QLFHGKLGGT GSAVGVPHHY HQQQQLMGMS ASTLQRLPLH YLGCDAADLK FSM*

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MYPSCSPLTV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKDRCR  60
IGTGPQDEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNAGR KIGLRKTLVF  120
YTGRAPHGKK TDWIMHEYRL DDDNAEVPIT EEGWVVCRVF MKKSIQRGFD QQGVVAAGDD  180
DELQSFHHSP GGATPPVDQK LGLHQFMHGC FPAFDPSMHL PHLTSAEAAP LGAPAFMSGT  240
PPAAAVNPLD MGSAPHNLAK LTASCRTAGD MLLNGADRFG AAGADWSILD KLLVSHQNLD  300
QLFHGKLGGT GSAVGVPHHY HQQQQLMGMS ASTLQRLPLH YLGCDAADLK FSM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-48	8	164	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-48	8	164	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-48	8	164	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-48	8	164	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-48	8	164	18	170	NAC domain-containing protein 19
3swm_B	2e-48	8	164	18	170	NAC domain-containing protein 19
3swm_C	2e-48	8	164	18	170	NAC domain-containing protein 19
3swm_D	2e-48	8	164	18	170	NAC domain-containing protein 19
3swp_A	2e-48	8	164	18	170	NAC domain-containing protein 19
3swp_B	2e-48	8	164	18	170	NAC domain-containing protein 19
3swp_C	2e-48	8	164	18	170	NAC domain-containing protein 19
3swp_D	2e-48	8	164	18	170	NAC domain-containing protein 19
4dul_A	2e-48	8	164	15	167	NAC domain-containing protein 19
4dul_B	2e-48	8	164	15	167	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU953045	1e-169	EU953045.1 Zea mays clone 1377565 mRNA sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025827212.1	0.0	NAC domain-containing protein 76-like
Swissprot	Q5Z6B6	1e-105	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	A0A2S3GN97	0.0	A0A2S3GN97_9POAL; Uncharacterized protein
STRING	Pavir.Ab01037.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	2e-92	NAC family protein

Link Out ? help Back to Top
Phytozome	Pahal.A01414.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]