PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01348.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 240aa    MW: 26893.4 Da    PI: 5.3955
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01348.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.33.2e-1458110155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     r+ +hn+ Er RR+++N+ ++ Lr+llP a   + +K+s a+++ ++ +YI +Lq
  Pahal.A01348.1  58 RKLNHNAYERDRRKHLNELYSSLRSLLPDA--DHTEKPSIATTVSEVLKYIPELQ 110
                     6889*************************6..49999***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.01E-1654124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.68E-1355114No hitNo description
PROSITE profilePS5088814.41157109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1358126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-1158110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-1063115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDQQVFDGDP FVRSISPPEE NTFSAELPWP DLDFDAGLYE LPKPVANETS SGGSSSQRKL  60
NHNAYERDRR KHLNELYSSL RSLLPDADHT EKPSIATTVS EVLKYIPELQ TEVENLERRK  120
KKLMNANCKR GVANLSGSTA PIVSVNCLNE MEIMVQVSFL SNSAEAALPF SVCIEVLENE  180
GLHLISSSTF SPTENRTFYS LHLQIYTLST LLVMLSRTRK PTFWAPYKSC TKSVEDDKK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RRKKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025792117.11e-150protein IRON-RELATED TRANSCRIPTION FACTOR 2-like
SwissprotA2WZ602e-66IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLA0A2T8I5K31e-149A0A2T8I5K3_9POAL; Uncharacterized protein
STRINGSi040099m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41240.12e-26basic helix-loop-helix protein 100