PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A01340.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

HB-other

Protein Properties

Length: 1164aa MW: 130480 Da PI: 6.9143

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A01340.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	43.6	5.2e-14	20	72	5	57
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 t+ +++q++ Le+++ +yp+ ee+ + A+ +gLt +qV++WF+ rR ke++ Pahal.A01340.1 20 TKKSPQQIQMLEKFYSDVQYPKPEEMGQYATCVGLTYNQVRIWFKERRRKERR 72 66799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.8E-14	12	73	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.722	13	73	IPR001356	Homeobox domain
SMART	SM00389	6.7E-14	15	77	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.34E-13	16	77	IPR009057	Homeodomain-like
CDD	cd00086	1.28E-7	20	63	No hit	No description
Pfam	PF00046	2.6E-11	20	72	IPR001356	Homeobox domain
PROSITE profile	PS50827	9.779	381	440	IPR018501	DDT domain
SMART	SM00571	4.5E-4	381	440	IPR018501	DDT domain
Pfam	PF02791	2.1E-7	383	435	IPR018501	DDT domain
Pfam	PF15612	2.9E-5	663	691	IPR028942	WHIM1 domain
Pfam	PF15613	2.9E-11	783	854	IPR028941	WHIM2 domain
Gene3D	G3DSA:3.90.10.10	6.3E-4	958	1003	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1164 aa Download sequence Send to blast
MPPAQMMTNS LGAKRENAGT KKSPQQIQML EKFYSDVQYP KPEEMGQYAT CVGLTYNQVR 60 IWFKERRRKE RREMEAIGSH MERQLSARSS GPRSSSSSSS CDQDPMYGTS CSRPEFGSRS 120 TSIVGEESTV RSQILFPKDY ILRKIFRKDG PPLGSEFDPL PQSERDRIRD TTCHHSSQNQ 180 RSVKKRKIME STSQRSDGPY EDTVPVRKHG IGKGLMTVWH AMYSHNVECQ SGPNFIDETG 240 CLRSLRPFDD CDGLEDNGKT TQNQGMVQKK VDKRSKPPAN RRKVPCKRVT SPKEHPPMDC 300 HLSVDKSEFS ELLTEQVTLV DDEELELSEL QAGPNPLRCS AHLTSSGRHG CPLCKDLLAK 360 FPPQSVKMKQ PFSAKPWDSS PEMVKKLFQV VRFVYTHFGS VDVHPFTFDE FAQAFHDKDS 420 LLLGEVHIGL LKLLLLNAEI GSGGVFAPRS SKDCRFLSFL NFVREQEFDV NFWIRSLNSL 480 TWVEILRQVL VASGFGSKQH MLNRDFFNKE KNQMVKYGLR PRTLKGELFA LLSKAGSGGL 540 KVSVLAKSSE IVDLNISVTL ELEQLICLTL SSDITLFEKI APSAYRLRVD PQIKGKEDAK 600 SDSEDSGSVD DDEDASSSDD ESSGSQKMKL LEHDNRIAPR KKQKNAIGSP NKCSEIDESY 660 PGERWLLGLM EGEYSDLSID EKLDCLVALI DIVSGAGSVP RLEEPQRVSH NMSRAQPHQS 720 GGKIKKSTKN LYQSSDESLN GPGNLYSLDC SQQGRSSSRR NQSHIIDSGR NDLSGVAHEP 780 QVVLLGSDRR YNSYWLFLGP CRADDPGHRR VYFESSEDGH WEVVDSPQEL LSLLSVLDSR 840 GTREAHLLAS MEKRQACLFE AMKKHVEGGN AVRLPASSDS FHSETSIGDG ASPKTSSASG 900 ASPVSDVENA SVPTDLEDSN LDSSSAIVIE NGRRRDERIF MWDRSQAFDK WIWTSFYSAL 960 TAVKFGKKSF KESLVRCESC HDLYWRDEKH CRICHSTFEV GFDLEERYAV HVATCREPED 1020 AHEVPNHKVL PSQLQALKAA IHAIEASIPE VAFTGSWMKS AHKLWVKRLR RTSSLPELLQ 1080 VLVDFVGAMD EDWLYKSSAS VSFSSYLDDI IVYFQSMPQT TSAVALWVVK LDALIAPYLD 1140 KAYTSRALAI KEPAQDHRLV QGS*

Sequence ? help Back to Top

Protein Sequence Length: 1164 aa Download sequence Send to blast

MPPAQMMTNS LGAKRENAGT KKSPQQIQML EKFYSDVQYP KPEEMGQYAT CVGLTYNQVR  60
IWFKERRRKE RREMEAIGSH MERQLSARSS GPRSSSSSSS CDQDPMYGTS CSRPEFGSRS  120
TSIVGEESTV RSQILFPKDY ILRKIFRKDG PPLGSEFDPL PQSERDRIRD TTCHHSSQNQ  180
RSVKKRKIME STSQRSDGPY EDTVPVRKHG IGKGLMTVWH AMYSHNVECQ SGPNFIDETG  240
CLRSLRPFDD CDGLEDNGKT TQNQGMVQKK VDKRSKPPAN RRKVPCKRVT SPKEHPPMDC  300
HLSVDKSEFS ELLTEQVTLV DDEELELSEL QAGPNPLRCS AHLTSSGRHG CPLCKDLLAK  360
FPPQSVKMKQ PFSAKPWDSS PEMVKKLFQV VRFVYTHFGS VDVHPFTFDE FAQAFHDKDS  420
LLLGEVHIGL LKLLLLNAEI GSGGVFAPRS SKDCRFLSFL NFVREQEFDV NFWIRSLNSL  480
TWVEILRQVL VASGFGSKQH MLNRDFFNKE KNQMVKYGLR PRTLKGELFA LLSKAGSGGL  540
KVSVLAKSSE IVDLNISVTL ELEQLICLTL SSDITLFEKI APSAYRLRVD PQIKGKEDAK  600
SDSEDSGSVD DDEDASSSDD ESSGSQKMKL LEHDNRIAPR KKQKNAIGSP NKCSEIDESY  660
PGERWLLGLM EGEYSDLSID EKLDCLVALI DIVSGAGSVP RLEEPQRVSH NMSRAQPHQS  720
GGKIKKSTKN LYQSSDESLN GPGNLYSLDC SQQGRSSSRR NQSHIIDSGR NDLSGVAHEP  780
QVVLLGSDRR YNSYWLFLGP CRADDPGHRR VYFESSEDGH WEVVDSPQEL LSLLSVLDSR  840
GTREAHLLAS MEKRQACLFE AMKKHVEGGN AVRLPASSDS FHSETSIGDG ASPKTSSASG  900
ASPVSDVENA SVPTDLEDSN LDSSSAIVIE NGRRRDERIF MWDRSQAFDK WIWTSFYSAL  960
TAVKFGKKSF KESLVRCESC HDLYWRDEKH CRICHSTFEV GFDLEERYAV HVATCREPED  1020
AHEVPNHKVL PSQLQALKAA IHAIEASIPE VAFTGSWMKS AHKLWVKRLR RTSSLPELLQ  1080
VLVDFVGAMD EDWLYKSSAS VSFSSYLDDI IVYFQSMPQT TSAVALWVVK LDALIAPYLD  1140
KAYTSRALAI KEPAQDHRLV QGS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	65	72	RRRKERRE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025793779.1	0.0	homeobox-DDT domain protein RLT3 isoform X1
TrEMBL	A0A2S3ISD5	0.0	A0A2S3ISD5_9POAL; Uncharacterized protein
STRING	Pavir.Ib01030.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4556	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12750.1	1e-147	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Pahal.A01340.1