PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A01297.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 234aa MW: 24079.5 Da PI: 5.2911 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00022 | 82 | 104 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Pahal.A01297.1 82 FTCNYCQRKFFSSQALGGHQNAH 104 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.16E-6 | 79 | 109 | No hit | No description |
PROSITE profile | PS50157 | 11.323 | 82 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 84 | 104 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MNSKEMCQEP CDELSEISSQ AASNTEASNS SGRVSLDLSL TVAAAAAAES STTDNSNGNS 60 GGGGAQVDAA ATVAAREPSR VFTCNYCQRK FFSSQALGGH QNAHRRERTL ARRALRLDAA 120 APYGYYADVA SLPLYGSGLY PIGIQAHASP AARPEQQQQR HDAAAAARAD ELKPARGLLG 180 PMPFFVGDDE VSFGWPGSFR PTAAGAPAGG AALNSAGGSA MFAGEEPDLT LRL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT088212 | 1e-133 | BT088212.1 Zea mays full-length cDNA clone ZM_BFc0067J23 mRNA, complete cds. | |||
GenBank | EU976944 | 1e-133 | EU976944.1 Zea mays clone 994515 zinc finger protein 7 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025797778.1 | 1e-169 | zinc finger protein 4-like | ||||
Refseq | XP_025797779.1 | 1e-169 | zinc finger protein 4-like | ||||
TrEMBL | A0A2S3ISH8 | 1e-167 | A0A2S3ISH8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ia03946.1.p | 1e-125 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9847 | 30 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66140.1 | 4e-15 | zinc finger protein 4 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A01297.1 |