PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A01288.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C2H2 | ||||||||
Protein Properties | Length: 418aa MW: 47025.3 Da PI: 5.8446 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.0004 | 44 | 67 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 +C+dCgk+++++ + H ++ H Pahal.A01288.1 44 VCSDCGKPCRSQTEVDLHTKRtgH 67 8***************99998666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 8 | 30 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 45 | 67 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:1.10.8.10 | 9.3E-11 | 93 | 160 | No hit | No description |
SuperFamily | SSF46934 | 6.38E-16 | 100 | 169 | IPR009060 | UBA-like |
CDD | cd14290 | 5.19E-19 | 115 | 163 | No hit | No description |
PROSITE profile | PS50030 | 10.716 | 115 | 156 | IPR015940 | Ubiquitin-associated domain |
Pfam | PF00627 | 1.5E-5 | 117 | 153 | IPR015940 | Ubiquitin-associated domain |
SMART | SM00165 | 0.0017 | 117 | 155 | IPR015940 | Ubiquitin-associated domain |
SuperFamily | SSF143503 | 5.62E-29 | 307 | 413 | IPR018997 | PUB domain |
CDD | cd10461 | 1.95E-65 | 311 | 417 | No hit | No description |
Pfam | PF09409 | 3.9E-24 | 324 | 395 | IPR018997 | PUB domain |
SMART | SM00580 | 2.0E-26 | 327 | 390 | IPR018997 | PUB domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 418 aa Download sequence Send to blast |
MAGLSLRCGD CGAQLRSVEE AQAHAEVTNH ANFVESTEAV LNLVCSDCGK PCRSQTEVDL 60 HTKRTGHKDF ADKTAEAAKP IDLEAPLKPA SSSEAMDVDA PASASEEPQE MVVPEVNKEM 120 LADLEGMGFA TARATRALHF SGNSTIEGAI NWLSEHQEDA DIDEMPLVPA NSKTEANKPS 180 LTPEEMKIKA QELRERARKK KEEEERRMER EREKERIRIG KELLEAKRIE EQNERKRMIE 240 LRRLEKEEEK RAREKIRQKL EEDKAERRRK LGLPPEDPAA SKPSAPPPVE EKKSALPIRP 300 ATKAERMRDC LRNLKQQNKD DDAKVKRAFQ TLLTYIGNVA KNPDEEKFRK IRLTNATFQE 360 RVGNLHGGIE FLELCGFEKL EGNEFLFLPR DKVDKAILNT AGAELNSAIT NPFFGVL* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT055029 | 0.0 | BT055029.1 Zea mays full-length cDNA clone ZM_BFc0028E22 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815335.1 | 0.0 | chromatin assembly factor 1 subunit A | ||||
TrEMBL | A0A2S3GPA1 | 0.0 | A0A2S3GPA1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab01342.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8464 | 15 | 17 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A01288.1 |