PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01260.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 286aa    MW: 30836.3 Da    PI: 5.0477
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01260.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.54.8e-11148191347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+  ++ +  ++ g+ Wk+ a +    R++ q+ s++qky
   Pahal.A01260.1 148 KWTPDEHRYFLAGLDKYKGN-WKAMAMEYLPSRSASQIASHYQKY 191
                      8*****************88.****876666*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.894141196IPR017930Myb domain
SuperFamilySSF466891.64E-11142195IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-10144194IPR006447Myb domain, plants
SMARTSM007175.9E-9145194IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-9148193IPR009057Homeodomain-like
PfamPF002491.6E-8148191IPR001005SANT/Myb domain
CDDcd001672.58E-7149191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MPHDEHAAAA PPPPAPEPPE PEREPTWTRR DDKLLELLLV TSSIVAIHYG SDIIGKTLAQ  60
MERRSRFMFT ELRHVLEALD VETPPEWDME IAATAAAPAA EEEAPEAAVP SAPPVAVAED  120
SALPTVVGGG GGTSEGRQVR RKKKKAVKWT PDEHRYFLAG LDKYKGNWKA MAMEYLPSRS  180
ASQIASHYQK YQNREKQRER DECRRASIHD ITEPASAAAL AVAGGGAATA RRKDDGDLPT  240
RAEASARGQE GEPREPVQSG EPTRGDGPGT GEEFPGPNDP GTLLT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139144RRKKKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025821294.10.011-beta-hydroxysteroid dehydrogenase 1B-like
TrEMBLA0A2S3GPP20.0A0A2S3GPP2_9POAL; Uncharacterized protein
STRINGPavir.Aa02423.1.p1e-114(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144181825
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.12e-15MYB family protein