PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A01126.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 725aa MW: 80710.4 Da PI: 8.3906 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 44.2 | 4.4e-14 | 148 | 191 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + rW++eE ell+++v+++G+++W tIa ++ R + c srw Pahal.A01126.2 148 KCRWSPEENELLAQLVNKHGTKNWQTIACAIP-DRNAHACLSRWK 191 569*****************************.***********7 PP | |||||||
2 | Myb_DNA-binding | 40.5 | 6.2e-13 | 200 | 242 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +W+++E+++l++a++ +G++ W + ++++ gRt + +k++w+ Pahal.A01126.2 200 KEAWSQQEELRLIRAHQIYGNK-WCKMVKHFP-GRTNNALKEHWR 242 579*******************.*********.***********7 PP | |||||||
3 | Myb_DNA-binding | 45.1 | 2.4e-14 | 408 | 451 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +grW +eE e+l + v+++G ++W+tIa+ ++ gR + qc+ rw Pahal.A01126.2 408 KGRWLAEENEILTKMVTKHGLKNWRTIASAIP-GRNAQQCRIRWT 451 79******************************.***********5 PP | |||||||
4 | Myb_DNA-binding | 34.1 | 6.5e-11 | 461 | 502 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 W+++E+++l++a++ +G+ W + ++++ gRt +k++w+ Pahal.A01126.2 461 EDWSEQEELKLIRAHQIYGSQ-WLKMVKHFP-GRTNHALKEHWR 502 67*******************.*********.***********7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.82 | 143 | 192 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.14E-25 | 146 | 241 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.0E-11 | 147 | 196 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.65E-10 | 150 | 194 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-18 | 150 | 203 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 2.4E-13 | 151 | 211 | No hit | No description |
PROSITE profile | PS51294 | 20.608 | 195 | 249 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-13 | 199 | 247 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.09E-10 | 202 | 242 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 204 | 249 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.992 | 403 | 458 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.44E-24 | 406 | 501 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 407 | 456 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.8E-20 | 409 | 461 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.49E-10 | 410 | 454 | No hit | No description |
Pfam | PF13921 | 1.3E-14 | 411 | 471 | No hit | No description |
SMART | SM00717 | 3.1E-10 | 459 | 507 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 13.775 | 459 | 509 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.2E-15 | 462 | 509 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.49E-8 | 463 | 502 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MSLYALSDLP PLASLPNPPR RRSGRRPGTR HRRPSPLRQD RTARPAQRRA PPSTEAASGD 60 ASGGTGASSL TAGMEESGDG MPRQRRDVSS TNHSSNSDAV AEGTSGVPHE TAKHCQDAES 120 EKTEDPPCKK NLHGFNECSS SKNLERTKCR WSPEENELLA QLVNKHGTKN WQTIACAIPD 180 RNAHACLSRW KYILDPAINK EAWSQQEELR LIRAHQIYGN KWCKMVKHFP GRTNNALKEH 240 WRGSMKRKLD SYLASGLLEQ VPDLHESLSV PQSSQSDIPK DSKLSSDRIR FSSILSTSSK 300 FKQELRELSE DAYTSVGESS DFIYAKAFDA DSAKVSESII AKPQQCATAR KKLNFVSSPV 360 KLKSDVPPET VKQHRHEMES EKTEGSPCKK NGYCFKQGSS LKKSERTKGR WLAEENEILT 420 KMVTKHGLKN WRTIASAIPG RNAQQCRIRW TRSLDPAVNK EDWSEQEELK LIRAHQIYGS 480 QWLKMVKHFP GRTNHALKEH WRGRMKGKLD YYLASGMLEQ IPDLQEDLSV PESSQSDIPK 540 DGQGSSERNR PPSLPIRPKP KSDLSELDEN ASTSEEESSD CMYNKGLDAH SAKVSEKVMA 600 KSKQRARARR KLDFLSTPVE LKVCTAAASC QRPPPEMEQT TPAGDNISPS DVCQDIPQNA 660 ASERVDVVIP TAASNPPNDV HSWATPDPCS PEIHEANASD PLDMSYCDDL IIDSPPYLHG 720 SSFI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-22 | 151 | 510 | 7 | 110 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025791248.1 | 0.0 | transcription factor MYB3R-2-like | ||||
TrEMBL | A0A2S3GN72 | 0.0 | A0A2S3GN72_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa02683.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.1 | 1e-38 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A01126.2 |