PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01126.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 726aa    MW: 80766.5 Da    PI: 8.555
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01126.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.24.4e-14148191145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + rW++eE ell+++v+++G+++W tIa  ++  R +  c srw 
   Pahal.A01126.1 148 KCRWSPEENELLAQLVNKHGTKNWQTIACAIP-DRNAHACLSRWK 191
                      569*****************************.***********7 PP
2Myb_DNA-binding40.56.2e-13200242145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W+++E+++l++a++ +G++ W +  ++++ gRt + +k++w+
   Pahal.A01126.1 200 KEAWSQQEELRLIRAHQIYGNK-WCKMVKHFP-GRTNNALKEHWR 242
                      579*******************.*********.***********7 PP
3Myb_DNA-binding45.12.4e-14409452145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +grW +eE e+l + v+++G ++W+tIa+ ++ gR + qc+ rw 
   Pahal.A01126.1 409 KGRWLAEENEILTKMVTKHGLKNWRTIASAIP-GRNAQQCRIRWT 452
                      79******************************.***********5 PP
4Myb_DNA-binding34.16.5e-11462503245
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                        W+++E+++l++a++ +G+  W +  ++++ gRt   +k++w+
   Pahal.A01126.1 462 EDWSEQEELKLIRAHQIYGSQ-WLKMVKHFP-GRTNHALKEHWR 503
                      67*******************.*********.***********7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.82143192IPR017930Myb domain
SuperFamilySSF466891.14E-25146241IPR009057Homeodomain-like
SMARTSM007173.0E-11147196IPR001005SANT/Myb domain
CDDcd001674.32E-10150194No hitNo description
Gene3DG3DSA:1.10.10.603.0E-18150203IPR009057Homeodomain-like
PfamPF139212.4E-13151211No hitNo description
PROSITE profilePS5129420.608195249IPR017930Myb domain
SMARTSM007174.3E-13199247IPR001005SANT/Myb domain
CDDcd001675.65E-10202242No hitNo description
Gene3DG3DSA:1.10.10.601.7E-17204249IPR009057Homeodomain-like
PROSITE profilePS5129419.992404459IPR017930Myb domain
SuperFamilySSF466898.44E-24407502IPR009057Homeodomain-like
SMARTSM007171.7E-12408457IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-20410462IPR009057Homeodomain-like
CDDcd001672.31E-10411455No hitNo description
PfamPF139211.3E-14412472No hitNo description
SMARTSM007173.1E-10460508IPR001005SANT/Myb domain
PROSITE profilePS5129413.775460510IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.3E-15463510IPR009057Homeodomain-like
CDDcd001672.31E-8464503No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 726 aa     Download sequence    Send to blast
MSLYALSDLP PLASLPNPPR RRSGRRPGTR HRRPSPLRQD RTARPAQRRA PPSTEAASGD  60
ASGGTGASSL TAGMEESGDG MPRQRRDVSS TNHSSNSDAV AEGTSGVPHE TAKHCQDAES  120
EKTEDPPCKK NLHGFNECSS SKNLERTKCR WSPEENELLA QLVNKHGTKN WQTIACAIPD  180
RNAHACLSRW KYILDPAINK EAWSQQEELR LIRAHQIYGN KWCKMVKHFP GRTNNALKEH  240
WRGSMKRKLD SYLASGLLEQ VPDLHESLSV PQSSQSDIPK DSKLSSDRIR FSSILSTSSK  300
FKQELRELSE DAYTSVGESS DFIYAKAFDA DSAKVSESII AKPQQCATAR KKLNFVSSPV  360
KLKSDVPPET VKQHRHEMES EKTGKGSPCK KNGYCFKQGS SLKKSERTKG RWLAEENEIL  420
TKMVTKHGLK NWRTIASAIP GRNAQQCRIR WTRSLDPAVN KEDWSEQEEL KLIRAHQIYG  480
SQWLKMVKHF PGRTNHALKE HWRGRMKGKL DYYLASGMLE QIPDLQEDLS VPESSQSDIP  540
KDGQGSSERN RPPSLPIRPK PKSDLSELDE NASTSEEESS DCMYNKGLDA HSAKVSEKVM  600
AKSKQRARAR RKLDFLSTPV ELKVCTAAAS CQRPPPEMEQ TTPAGDNISP SDVCQDIPQN  660
AASERVDVVI PTAASNPPND VHSWATPDPC SPEIHEANAS DPLDMSYCDD LIIDSPPYLH  720
GSSFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-221515117110B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025791248.10.0transcription factor MYB3R-2-like
TrEMBLA0A2S3GNN70.0A0A2S3GNN7_9POAL; Uncharacterized protein
STRINGPavir.Aa02683.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP142631723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.11e-38myb domain protein 3r-4