PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A01123.5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 343aa MW: 37232.5 Da PI: 8.2906 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.3 | 3.1e-12 | 53 | 92 | 8 | 48 |
HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 Ed l++ v+++ +++W+t+ar ++ gR+++qc++rw yl Pahal.A01123.5 53 EDGNLIRMVNLHSSKSWSTVARSIP-GRSPNQCRDRWMFYL 92 8889*********************.***********9875 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.8e-16 | 99 | 139 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++W++ Ed +l++a+k +G++ W++ a+ ++ gRt+k +k++w Pahal.A01123.5 99 QPWSEHEDIKLIQAHKIHGSK-WSKLAKLFP-GRTGKAVKNHW 139 79*******************.*********.*********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 6.3E-7 | 45 | 94 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-15 | 51 | 95 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 8.897 | 51 | 92 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 5.5E-11 | 53 | 92 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.98E-10 | 53 | 92 | No hit | No description |
SuperFamily | SSF46689 | 4.4E-27 | 72 | 149 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.426 | 93 | 147 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.9E-21 | 96 | 148 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-13 | 97 | 145 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-14 | 99 | 139 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.39E-12 | 100 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 343 aa Download sequence Send to blast |
MRRCGGGAPG RRSSGGSTCC SGEIDWITDE LSACPTRKVI SSRGSAGGLK RKEDGNLIRM 60 VNLHSSKSWS TVARSIPGRS PNQCRDRWMF YLDPAVNNQP WSEHEDIKLI QAHKIHGSKW 120 SKLAKLFPGR TGKAVKNHWP SLMRKQMKSD LVSGLPEQFL YMPNDPSVTK NKGSSTIQSD 180 EDSSTNIHVS SDLAVRPKSE QGLAENGRNE STLKGKSYDS MHGNGSVSHS VNVSEKVDGQ 240 IATSNSLSSM DQKATSATAS FPGSLPKEES TNFLEVTPNR GLSTMYNHLS NDYFDGMCSS 300 ADPESQGLHL SSIADLLDMP YCKSLMIVSP DSPNHGNYTD GM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-26 | 47 | 147 | 5 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 3e-26 | 47 | 147 | 5 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 3e-26 | 47 | 147 | 5 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025828202.1 | 0.0 | transcription factor MYB3R-4-like isoform X1 | ||||
TrEMBL | A0A2S3GNF6 | 0.0 | A0A2S3GNF6_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J04773.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11510.2 | 3e-33 | myb domain protein 3r-4 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A01123.5 |