PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01123.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 329aa    MW: 35834.9 Da    PI: 7.3104
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01123.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.41.4e-123678548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     T  Ed  l++ v+++ +++W+t+ar ++ gR+++qc++rw  yl
   Pahal.A01123.3 36 TRKEDGNLIRMVNLHSSKSWSTVARSIP-GRSPNQCRDRWMFYL 78
                     5679999*********************.***********9875 PP
2Myb_DNA-binding521.7e-1685125244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++W++ Ed +l++a+k +G++ W++ a+ ++ gRt+k +k++w
   Pahal.A01123.3  85 QPWSEHEDIKLIQAHKIHGSK-WSKLAKLFP-GRTGKAVKNHW 125
                      79*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-53180IPR001005SANT/Myb domain
PROSITE profilePS500909.2563678IPR017877Myb-like domain
PfamPF002492.3E-113678IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.3E-173683IPR009057Homeodomain-like
CDDcd001671.62E-103678No hitNo description
SuperFamilySSF466896.74E-2758135IPR009057Homeodomain-like
PROSITE profilePS5129421.42679133IPR017930Myb domain
SMARTSM007175.2E-1383131IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2184134IPR009057Homeodomain-like
PfamPF002493.3E-1485125IPR001005SANT/Myb domain
CDDcd001671.21E-1286125No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MRRCGGGAPG RRSSGGSTCC SGEIDWITDE LSACPTRKED GNLIRMVNLH SSKSWSTVAR  60
SIPGRSPNQC RDRWMFYLDP AVNNQPWSEH EDIKLIQAHK IHGSKWSKLA KLFPGRTGKA  120
VKNHWPSLMR KQMKSDLVSG LPEQFLYMPN DPSVTKNKGS STIQSDEDSS TNIHVSSDLA  180
VRPKSEQGLA ENGRNESTLK GKSYDSMHGN GSVSHSVNVS EKVDGQIATS NSLSSMDQKA  240
TSATASFPGS LPKEESTNFL EVTPNRGLST MYNHLSNDYF DGMCSSADPE SQGLHLSSIA  300
DLLDMPYCKS LMIVSPDSPN HGNYTDGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A7e-27361338105MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-27361338105C-Myb DNA-Binding Domain
1msf_C7e-27361338105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828202.10.0transcription factor MYB3R-4-like isoform X1
TrEMBLA0A2S3GNF60.0A0A2S3GNF6_9POAL; Uncharacterized protein
STRINGPavir.J04773.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.24e-33myb domain protein 3r-4