PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A01123.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 307aa    MW: 33651.6 Da    PI: 7.6844
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A01123.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.61.2e-121456548
                     -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     T  Ed  l++ v+++ +++W+t+ar ++ gR+++qc++rw  yl
   Pahal.A01123.2 14 TRKEDGNLIRMVNLHSSKSWSTVARSIP-GRSPNQCRDRWMFYL 56
                     5679999*********************.***********9875 PP
2Myb_DNA-binding52.11.5e-1663103244
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      ++W++ Ed +l++a+k +G++ W++ a+ ++ gRt+k +k++w
   Pahal.A01123.2  63 QPWSEHEDIKLIQAHKIHGSK-WSKLAKLFP-GRTGKAVKNHW 103
                      79*******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-5958IPR001005SANT/Myb domain
PROSITE profilePS500909.2561456IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.3E-171461IPR009057Homeodomain-like
PfamPF002492.1E-111456IPR001005SANT/Myb domain
CDDcd001671.33E-101456No hitNo description
SuperFamilySSF466895.87E-2736113IPR009057Homeodomain-like
PROSITE profilePS5129421.42657111IPR017930Myb domain
SMARTSM007175.2E-1361109IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-2162112IPR009057Homeodomain-like
PfamPF002493.0E-1463103IPR001005SANT/Myb domain
CDDcd001679.42E-1364103No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MTQNIKGQLS ACPTRKEDGN LIRMVNLHSS KSWSTVARSI PGRSPNQCRD RWMFYLDPAV  60
NNQPWSEHED IKLIQAHKIH GSKWSKLAKL FPGRTGKAVK NHWPSLMRKQ MKSDLVSGLP  120
EQFLYMPNDP SVTKNKGSST IQSDEDSSTN IHVSSDLAVR PKSEQGLAEN GRNESTLKGK  180
SYDSMHGNGS VSHSVNVSEK VDGQIATSNS LSSMDQKATS ATASFPGSLP KEESTNFLEV  240
TPNRGLSTMY NHLSNDYFDG MCSSADPESQ GLHLSSIADL LDMPYCKSLM IVSPDSPNHG  300
NYTDGM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-26141118105MYB PROTO-ONCOGENE PROTEIN
1mse_C5e-26141118105C-Myb DNA-Binding Domain
1msf_C5e-26141118105C-Myb DNA-Binding Domain
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025828211.10.0transcription factor MYB3R-3-like isoform X2
RefseqXP_025828219.10.0transcription factor MYB3R-3-like isoform X2
TrEMBLA0A3L6QFG60.0A0A3L6QFG6_PANMI; Myb-related protein 3R-1-like
STRINGPavir.J04773.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11510.12e-33myb domain protein 3r-4