PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A00946.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

BES1

Protein Properties

Length: 385aa MW: 38741.1 Da PI: 10.3901

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A00946.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	153.6	1.5e-47	47	141	4	97
DUF822 4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspesslqss 97 r p+ kErEnn+rRERrRR ++++i++GLRa+Gny lp ++DnneVl+ALc eAGw+ve+DGttyr+g++p+ + g sa +sp ss+ + Pahal.A00946.1 47 VRVPSSKERENNRRRERRRRMVTSRIFSGLRAHGNYILPRHCDNNEVLRALCDEAGWIVEADGTTYRRGCRPPpHMRGGFGGSAPVSPGSSYPVT 141 589********************************************************************666667899999***99854 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	6.7E-44	48	140	IPR008540	BES1/BZR1 plant transcription factor, N-terminal

Sequence ? help Back to Top
Protein Sequence Length: 385 aa Download sequence Send to blast
MNGEGMVGAG AGAGAGAGGS SGGGGDKGKG NGGAGNGCGA RGSMAPVRVP SSKERENNRR 60 RERRRRMVTS RIFSGLRAHG NYILPRHCDN NEVLRALCDE AGWIVEADGT TYRRGCRPPP 120 HMRGGFGGSA PVSPGSSYPV TPTAPYGLGS GSPYLTLGGG GGLFYGAAGR AEAGSHGLAD 180 WFRRLPGAPD GGASSSSAPV TPQNGSPPQS MLARWAAENN AAAGASNLQP RRAAGLSLYA 240 SQQRPMPITM PPSPVSGGAP VANAVDPMRL LAGIQRSTAA AAAAAAANNN RVRAYSPLGT 300 PVRPSLFVAG APSSMLRAPG PVQGSGGQWA APAPAARAGG GGDVEMAPRE FSFAWEGEAV 360 SQDYADEDAL ELTLGNSRTR ADRA*

Sequence ? help Back to Top

Protein Sequence Length: 385 aa Download sequence Send to blast

MNGEGMVGAG AGAGAGAGGS SGGGGDKGKG NGGAGNGCGA RGSMAPVRVP SSKERENNRR  60
RERRRRMVTS RIFSGLRAHG NYILPRHCDN NEVLRALCDE AGWIVEADGT TYRRGCRPPP  120
HMRGGFGGSA PVSPGSSYPV TPTAPYGLGS GSPYLTLGGG GGLFYGAAGR AEAGSHGLAD  180
WFRRLPGAPD GGASSSSAPV TPQNGSPPQS MLARWAAENN AAAGASNLQP RRAAGLSLYA  240
SQQRPMPITM PPSPVSGGAP VANAVDPMRL LAGIQRSTAA AAAAAAANNN RVRAYSPLGT  300
PVRPSLFVAG APSSMLRAPG PVQGSGGQWA APAPAARAGG GGDVEMAPRE FSFAWEGEAV  360
SQDYADEDAL ELTLGNSRTR ADRA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zd4_A	6e-21	68	120	392	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B	6e-21	68	120	392	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C	6e-21	68	120	392	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D	6e-21	68	120	392	444	Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025819084.1	0.0	protein BZR1 homolog 4-like
TrEMBL	A0A2S3GMV6	0.0	A0A2S3GMV6_9POAL; Uncharacterized protein
STRING	Pavir.Aa02766.1.p	1e-148	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18666	5	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78700.1	4e-26	BES1/BZR1 homolog 4

Link Out ? help Back to Top
Phytozome	Pahal.A00946.1