PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A00927.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | bHLH | ||||||||
Protein Properties | Length: 199aa MW: 20830.4 Da PI: 10.3279 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 21.9 | 3.3e-07 | 26 | 83 | 5 | 53 |
HHHHHHHHHHHHHHHHHHHHCTSCC.C...........TTS-.STCHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.as........kapskK.lsKaeiLekAveYIks 53 + +Er+RR+++N +++L +l+ +s + ++ ++ + Le+A YI++ Pahal.A00927.1 26 RKTVERNRRNQMNALYSRLDQLVRAgSSpssappavQ-CGPPaMTRPDRLEEAAAYIRQ 83 5789*******************99666999999854.444459999999999999997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 8.734 | 21 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 3.7E-8 | 24 | 103 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.21E-7 | 26 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.1E-4 | 27 | 83 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MDMPPPPPPP PPHFGGPAAG GGRPDRKTVE RNRRNQMNAL YSRLDQLVRA GSSPSSAPPA 60 VQCGPPAMTR PDRLEEAAAY IRQTTERVER LKERKRELTA ARAASSSQGS SSAGAAAEVE 120 VQHLGSGLHA ILVTGAPPSD GASFHRAVRA VEEAGGEVQN AHFSVVGARA IYTIHTLVAE 180 GGIERVVQRL KAALRGDA* |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005756 | 5e-50 | AP005756.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OSJNBb0035N08. | |||
GenBank | AP014958 | 5e-50 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025798292.1 | 1e-139 | transcription factor bHLH162-like isoform X1 | ||||
TrEMBL | A0A2S3GNC9 | 1e-138 | A0A2S3GNC9_9POAL; Uncharacterized protein | ||||
STRING | Pavir.J36523.1.p | 1e-102 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP11987 | 29 | 38 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A00927.1 |