PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00897.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-other
Protein Properties Length: 260aa    MW: 29588.4 Da    PI: 8.477
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00897.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.82.2e-092080755
                    --HHHHHHHHHHHH..HSSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
        Homeobox  7 ftkeqleeLeelFe..knrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                    f ++++ee+e+  +  +n+ p++ ++eeLA+k            ++ +qV++WF+NrR+  
  Pahal.A00897.1 20 FLPDEVEEMEARLQplRNPSPDRVAMEELARKFsasterigkvVIQPKQVRNWFCNRRYCS 80
                    66788999999999666*************************9***************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00221387IPR001356Homeobox domain
SuperFamilySSF466891.8E-91981IPR009057Homeodomain-like
PROSITE profilePS500719.881983IPR001356Homeobox domain
CDDcd000864.91E-71978No hitNo description
Gene3DG3DSA:1.10.10.605.7E-82078IPR009057Homeodomain-like
PfamPF000466.8E-72080IPR001356Homeobox domain
PfamPF167194.3E-29129256IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGRPPSAWSD GVLAAAPFRF LPDEVEEMEA RLQPLRNPSP DRVAMEELAR KFSASTERIG  60
KVVIQPKQVR NWFCNRRYCS REGKAARAAQ AQGNSAARRV EAYRQLAAGS SAPVHAGSSS  120
GKISMEGSQI KYEAKSDRDG AWYDVDVISF RMSELGEPEA MVRFSGIGAE EAEWVNTRTC  180
LRQRSLPFRA TECVLLRCWD RVLCYKESEQ SGLYFDAEVH GRQIRKRHDS RECDCRFLVR  240
YDHDQSEEIV YLRNLCRRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iup_A1e-291282592133SAWADEE HOMEODOMAIN HOMOLOG 1
4iup_B1e-291282592133SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004956551.12e-86protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680276.12e-86protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680277.12e-86protein SAWADEE HOMEODOMAIN HOMOLOG 2
RefseqXP_022680278.12e-86protein SAWADEE HOMEODOMAIN HOMOLOG 2
SwissprotQ8RWJ72e-65SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2S3GN360.0A0A2S3GN36_9POAL; Uncharacterized protein
STRINGPavir.Ab00825.1.p1e-152(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41902948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.15e-66sequence-specific DNA binding transcription factors;sequence-specific DNA binding