PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A00815.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | FAR1 | ||||||||
Protein Properties | Length: 113aa MW: 12746.5 Da PI: 10.0635 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 55.7 | 1.7e-17 | 11 | 91 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++Yn+YA +GFs+rks++k++ +g+i+++ vCs eg+ ++e+ k +trtgC a++++ +k+g w v++++le nH la Pahal.A00815.1 11 EMYNKYAGIIGFSIRKSTTKRR-PDGTIYQKYIVCSGEGHGKPESLK--------GTTRTGCGARIQLVVSKEGIWTVKSVVLEQNHYLA 91 58**************998776.9999****************9888........89******************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-14 | 11 | 91 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 113 aa Download sequence Send to blast |
MAFEYEDNAY EMYNKYAGII GFSIRKSTTK RRPDGTIYQK YIVCSGEGHG KPESLKGTTR 60 TGCGARIQLV VSKEGIWTVK SVVLEQNHYL ASPNKNKNLR SQRPISEADR KAN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025825432.1 | 5e-63 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2T8IGC4 | 8e-52 | A0A2T8IGC4_9POAL; Uncharacterized protein | ||||
STRING | TRIUR3_19482-P1 | 7e-45 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1212 | 5 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-13 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A00815.1 |