PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00650.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 296aa    MW: 30712 Da    PI: 10.1801
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00650.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.83.4e-0796121227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     kt+lC+ +     Ck G++C+FaHg+
  Pahal.A00650.1  96 KTRLCNKYNTAEGCKWGGKCHFAHGE 121
                     8***********************96 PP
2zf-CCCH352.3e-11261285126
                     --S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                     +kt+ C +fa+ G C +GdrC+FaH+
  Pahal.A00650.1 261 FKTKMCENFAK-GSCTFGDRCHFAHV 285
                     69*********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9063462IPR000571Zinc finger, CCCH-type
SMARTSM003560.723461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.09E-53559IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-73659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.3E-1391126IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.28E-893125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.04294122IPR000571Zinc finger, CCCH-type
SMARTSM003560.4394121IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-496121IPR000571Zinc finger, CCCH-type
SMARTSM003225.2E-10164234IPR004087K Homology domain
PROSITE profilePS5008414.634165229IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.102.1E-14165233IPR004088K Homology domain, type 1
SuperFamilySSF547913.34E-14167257IPR004088K Homology domain, type 1
CDDcd001053.76E-13167229No hitNo description
PfamPF000131.6E-10167231IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.107.8E-16258292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.849260287IPR000571Zinc finger, CCCH-type
SMARTSM003567.2E-7260286IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-8260291IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-8261285IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MEGGRKRGTA DGANGASAGG KRARESESFQ TGVGSKTKPC TKFFSTSGCP FGEGCHFLHC  60
FPGGYQAVSK MTNLGGPAVA PPGRMMMGGP PTPTVKTRLC NKYNTAEGCK WGGKCHFAHG  120
ERELGKPMLM DSSMHSPVGP RPTGHFAPPP MANPGMATPA SFGASATAKI SVDASLAGGI  180
IGRGGVNTKQ ISRVTGAKLA IRDHESDTSL KNIELEGTFD QIKHASAMVR ELIVNISGSA  240
PPLAKNPPRG PHRGGGTGSN FKTKMCENFA KGSCTFGDRC HFAHVENELR KPAAA*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816019.10.0zinc finger CCCH domain-containing protein 14
SwissprotQ7F8R01e-169C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2S3GMI40.0A0A2S3GMI4_9POAL; Uncharacterized protein
STRINGSb04g006450.11e-180(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.12e-67C3H family protein