PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A00592.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 297aa MW: 31365.2 Da PI: 9.1385 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.8 | 6.1e-19 | 11 | 56 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + Pahal.A00592.1 11 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 56 79******************************.***********985 PP | |||||||
2 | Myb_DNA-binding | 55.4 | 1.4e-17 | 63 | 106 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eEd ++ a+++lG++ W++Iar ++ gRt++ +k++w++ Pahal.A00592.1 63 RRPFTPEEDAAILAAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 106 679*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.481 | 6 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.61E-31 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.6E-17 | 10 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.8E-18 | 11 | 56 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 12 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.52E-16 | 13 | 55 | No hit | No description |
SMART | SM00717 | 5.6E-16 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 3.5E-15 | 63 | 106 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 21.861 | 63 | 112 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 65 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.50E-13 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0048527 | Biological Process | lateral root development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MGVESECDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ 60 VERRPFTPEE DAAILAAHAR LGNRWAAIAR LLPGRTDNAV KNHWNSSLKR KLATTTLEAG 120 DAEPPCKRAS PGPGSPTGSE RSELSHGSGG GGAQVFRPVP RAGGFDAISA ADARPPPPPR 180 DEDPLTSLSL SLPGLEQASS GFRHDSARSH FQELSPSRSP SPPSPSSSTT GPYPFSGELV 240 AAMQEMIRAE VRKYMSGAGL RAGCGAGAVG EACMPQLVEG VMRAAAERVG AVVTRP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-41 | 8 | 114 | 4 | 110 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00653 | PBM | Transfer from LOC_Os02g09480 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038391 | 0.0 | BT038391.1 Zea mays full-length cDNA clone ZM_BFb0229K03 mRNA, complete cds. | |||
GenBank | EU956045 | 0.0 | EU956045.1 Zea mays clone 1556153 MYB transcription factor TaMYB1 mRNA, complete cds. | |||
GenBank | HQ858701 | 0.0 | HQ858701.1 Zea mays clone UT1157 MYB transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025817137.1 | 0.0 | transcription factor MYB44-like | ||||
Swissprot | Q9SN12 | 3e-68 | MYB77_ARATH; Transcription factor MYB77 | ||||
TrEMBL | A0A2S3GMD3 | 0.0 | A0A2S3GMD3_9POAL; Uncharacterized protein | ||||
STRING | GRMZM2G145444_P01 | 1e-162 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP789 | 38 | 154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G67300.1 | 3e-65 | myb domain protein r1 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A00592.1 |
Publications ? help Back to Top | |||
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