PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00592.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 297aa    MW: 31365.2 Da    PI: 9.1385
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00592.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86.1e-191156147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEde l ++v+++G ++W++I r ++ gR++k+c++rw + 
   Pahal.A00592.1 11 KGPWSPEEDEALRRLVERHGARNWTAIGRGIP-GRSGKSCRLRWCNQ 56
                     79******************************.***********985 PP

2Myb_DNA-binding55.41.4e-1763106146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eEd  ++ a+++lG++ W++Iar ++ gRt++ +k++w++
   Pahal.A00592.1  63 RRPFTPEEDAAILAAHARLGNR-WAAIARLLP-GRTDNAVKNHWNS 106
                      679*******************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.481661IPR017930Myb domain
SuperFamilySSF466891.61E-318104IPR009057Homeodomain-like
SMARTSM007179.6E-171059IPR001005SANT/Myb domain
PfamPF002493.8E-181156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-251264IPR009057Homeodomain-like
CDDcd001673.52E-161355No hitNo description
SMARTSM007175.6E-1662110IPR001005SANT/Myb domain
PfamPF002493.5E-1563106IPR001005SANT/Myb domain
PROSITE profilePS5129421.86163112IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.4E-2465112IPR009057Homeodomain-like
CDDcd001679.50E-1365108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009723Biological Processresponse to ethylene
GO:0009751Biological Processresponse to salicylic acid
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MGVESECDRI KGPWSPEEDE ALRRLVERHG ARNWTAIGRG IPGRSGKSCR LRWCNQLSPQ  60
VERRPFTPEE DAAILAAHAR LGNRWAAIAR LLPGRTDNAV KNHWNSSLKR KLATTTLEAG  120
DAEPPCKRAS PGPGSPTGSE RSELSHGSGG GGAQVFRPVP RAGGFDAISA ADARPPPPPR  180
DEDPLTSLSL SLPGLEQASS GFRHDSARSH FQELSPSRSP SPPSPSSSTT GPYPFSGELV  240
AAMQEMIRAE VRKYMSGAGL RAGCGAGAVG EACMPQLVEG VMRAAAERVG AVVTRP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-4181144110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in auxin response. Functions in auxin signal transduction and modulates lateral root growth. Interacts with ARF response factors to promote auxin-responsive gene expression (PubMed:17675404). In response to auxin, binds sequence-specific motifs in the promoter of the auxin-responsive gene IAA19, and activates IAA19 transcription. The IAA19 transcription activation by MYB77 is enhanced by direct interaction between MYB77 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:17675404, ECO:0000269|PubMed:24894996}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00653PBMTransfer from LOC_Os02g09480Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin (PubMed:17675404). Down-regulated by potassium deprivation (PubMed:15173595). {ECO:0000269|PubMed:15173595, ECO:0000269|PubMed:17675404}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0383910.0BT038391.1 Zea mays full-length cDNA clone ZM_BFb0229K03 mRNA, complete cds.
GenBankEU9560450.0EU956045.1 Zea mays clone 1556153 MYB transcription factor TaMYB1 mRNA, complete cds.
GenBankHQ8587010.0HQ858701.1 Zea mays clone UT1157 MYB transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817137.10.0transcription factor MYB44-like
SwissprotQ9SN123e-68MYB77_ARATH; Transcription factor MYB77
TrEMBLA0A2S3GMD30.0A0A2S3GMD3_9POAL; Uncharacterized protein
STRINGGRMZM2G145444_P011e-162(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78938154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.13e-65myb domain protein r1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]