PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00562.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family TALE
Protein Properties Length: 329aa    MW: 36113.8 Da    PI: 8.1498
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00562.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.71.7e-072763092154
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                     k +yp+++++++L +++gL+ +q+ +WF N+R +
  Pahal.A00562.1 276 KWPYPTEDDKARLVQETGLQLKQINNWFINQRKR 309
                     469*****************************87 PP
2ELK26.81.2e-09230251122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELK++L+++Y+++L+++++E++
  Pahal.A00562.1 230 ELKNELKQGYKEKLVDIREEIL 251
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012552.3E-194084IPR005540KNOX1
PfamPF037901.6E-164380IPR005540KNOX1
SMARTSM012563.3E-13105174IPR005541KNOX2
PfamPF037911.9E-10135173IPR005541KNOX2
PfamPF037892.0E-6230251IPR005539ELK domain
PROSITE profilePS5121310.057230250IPR005539ELK domain
SMARTSM011880.0023230251IPR005539ELK domain
PROSITE profilePS5007111.353250313IPR001356Homeobox domain
SMARTSM003893.4E-10252317IPR001356Homeobox domain
SuperFamilySSF466898.55E-16252315IPR009057Homeodomain-like
CDDcd000863.36E-11253314No hitNo description
Gene3DG3DSA:1.10.10.601.2E-24257314IPR009057Homeodomain-like
PfamPF059209.3E-18270309IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MSFHYPDHGL TMDAAAAAAA AAAAASSPNP SGFSPGVGGE REKAAIAAHP LYERLLEAHV  60
ACLRVATPVD QLPRIDAQIA ARPRRSRPPL GPRPRGAPPA ARSSTSSCSC TDDYFSCLLL  120
LGLFNGFTLL HSKTHYVLLL CSFKEQLQQH VRVHAMEAVM GCWELEQSLQ SLTGASPGEG  180
TGATMSDDED NQVDSEANMF DGNEGSDGMG FGPLILTEGE RSLVERVRQE LKNELKQGYK  240
EKLVDIREEI LRKRRAGKLP GDTASILKAW WQAHSKWPYP TEDDKARLVQ ETGLQLKQIN  300
NWFINQRKRN WHSNPTSSGE KTKKKRLS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1306325RKRNWHSNPTSSGEKTKKKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0685100.0BT068510.1 Zea mays full-length cDNA clone ZM_BFb0231A20 mRNA, complete cds.
GenBankBT0836590.0BT083659.1 Zea mays full-length cDNA clone ZM_BFb0026A02 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025813953.10.0homeobox protein knotted-1-like 2
SwissprotQ0E3C31e-174KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A2T7F2T60.0A0A2T7F2T6_9POAL; Uncharacterized protein
TrEMBLA0A2T8KU590.0A0A2T8KU59_9POAL; Uncharacterized protein
STRINGPavir.J26794.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.21e-137KNOTTED1-like homeobox gene 3