PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00452.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 259aa    MW: 28762.5 Da    PI: 4.6976
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00452.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC176.33.1e-55811851102
           NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdfl 92 
                     ql+ fw++q   ie++tdfknh+lPlarikki+kadedv+misaeaPv+++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdi+dfl
  Pahal.A00452.1  81 QLREFWTTQmdeIEQTTDFKNHTLPLARIKKIMKADEDVRMISAEAPVVFAKACEVFILELTLRSWMHTEENKRRTLQKNDIAAAITRTDIYDFL 175
                     89******988889********************************************************************************* PP

           NF-YC  93 vdivprdelk 102
                     vdi+prde+k
  Pahal.A00452.1 176 VDIIPRDEMK 185
                     *******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.52E-3361175IPR009072Histone-fold
Gene3DG3DSA:1.10.20.102.2E-3795167IPR009072Histone-fold
PfamPF008088.0E-21103166IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEPSSQPQPV MGVATGGSQA YPAAAAYAPP AMVPGAPAVV PPGSQPAAPF PNPAQLSAQH  60
QMVYQQAQQF HQQLQQQQQQ QLREFWTTQM DEIEQTTDFK NHTLPLARIK KIMKADEDVR  120
MISAEAPVVF AKACEVFILE LTLRSWMHTE ENKRRTLQKN DIAAAITRTD IYDFLVDIIP  180
RDEMKEEGLG LPRVGLPPAV GATTDSYPPY YYMTAQQMPP GGGMIYGGQQ GHPVTYMWQQ  240
PQGQEEEPPE EQQQQRSA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B3e-5988181295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153159RRTLQKN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of flowering time under long day (LD) conditions. Functions as repressor of flowering, independently of HD1 and GHD7. Controls flowering time by negatively regulating the expression of EHD1 and HD3A (PubMed:26542958). Component of the NF-Y/HAP transcription factor complex (By similarity). {ECO:0000250, ECO:0000269|PubMed:26542958}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation under long day (LD) conditions. Expression increases in the middle of daytime, peaks around the end of the light period and gradually decreases during the dark period and beginning of daylight. {ECO:0000269|PubMed:26542958}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1001040.0FP100104.1 Phyllostachys edulis cDNA clone: bphylf054d17, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818162.10.0nuclear transcription factor Y subunit C-4-like
RefseqXP_025818170.10.0nuclear transcription factor Y subunit C-4-like
RefseqXP_025818176.10.0nuclear transcription factor Y subunit C-4-like
RefseqXP_025818183.10.0nuclear transcription factor Y subunit C-4-like
SwissprotQ655V51e-121NFYC4_ORYSJ; Nuclear transcription factor Y subunit C-4
TrEMBLA0A2S3GLP40.0A0A2S3GLP4_9POAL; Uncharacterized protein
STRINGPavir.Aa03384.1.p1e-158(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27033790
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56170.21e-73nuclear factor Y, subunit C2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Kim SK, et al.
    OsNF-YC2 and OsNF-YC4 proteins inhibit flowering under long-day conditions in rice.
    Planta, 2016. 243(3): p. 563-76
    [PMID:26542958]