PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A00409.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | MYB | ||||||||
Protein Properties | Length: 378aa MW: 41204.6 Da PI: 5.4352 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5.2e-17 | 27 | 74 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEde+lv v+++G g+W+ + r+ g+ R++k+c++rw ++l Pahal.A00409.2 27 KGAWTAEEDEKLVAHVQRHGEGSWNQVRRETGLLRCGKSCRLRWANHL 74 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 51.1 | 3.1e-16 | 80 | 123 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE++l ++++ +lG++ W++Ia++++ gRt++++k++w++ Pahal.A00409.2 80 RGAMSPEEELLVLRLHSLLGNK-WARIAAHLP-GRTDNEIKNYWNT 123 899*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.905 | 22 | 74 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.5E-22 | 22 | 77 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.09E-29 | 24 | 121 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-14 | 26 | 76 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-14 | 27 | 74 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 9.80E-12 | 29 | 74 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 42 | 51 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 24.84 | 75 | 129 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-23 | 78 | 128 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.9E-15 | 79 | 127 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-15 | 80 | 123 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MARGGGSRRF GLKGPPEEEE EGAGLKKGAW TAEEDEKLVA HVQRHGEGSW NQVRRETGLL 60 RCGKSCRLRW ANHLRPDLKR GAMSPEEELL VLRLHSLLGN KWARIAAHLP GRTDNEIKNY 120 WNTRTKRRER AGLPLYPPEV EHEVALIRAG GPNTILGDDA GAAHELPFLF DAADPLASLP 180 LPPPASDSPA LLYHFGKAAQ EPLPLPYISN LQIDPVKYLQ PLAPLLPPMA HRELPSVQSA 240 AIATGAALET MFLRELGHQQ VPDANLVNFG AMPGLVSYEN AVSSHCVQEE VQNLGDKRGR 300 LSGDEKPAKR LLASSVADDK EMPNLLRDDV TGEAPGHDAV VADQTIFLTA GSIDDDELQH 360 LMMPSAPLIC DEDGWNQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 25 | 128 | 5 | 107 | B-MYB |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025826291.1 | 0.0 | transcriptional activator Myb-like isoform X2 | ||||
Refseq | XP_025826299.1 | 0.0 | transcriptional activator Myb-like isoform X2 | ||||
TrEMBL | A0A2S3GLW1 | 0.0 | A0A2S3GLW1_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ab00447.1.p | 1e-133 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.2 | 2e-49 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A00409.2 |