PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pahal.A00388.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
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Family | C3H | ||||||||
Protein Properties | Length: 74aa MW: 8399.56 Da PI: 11.774 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.9 | 1.5e-07 | 33 | 56 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+ C ++r G C++ d+C+FaHg Pahal.A00388.1 33 YKTKMCALWQR-GGCSR-DTCSFAHG 56 9**********.*****.*******8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-13 | 27 | 62 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 3.14E-6 | 31 | 62 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.385 | 32 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.6E-4 | 33 | 56 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MRDRSVDREF PSRERGDRPP PGMLGPPRRG PAYKTKMCAL WQRGGCSRDT CSFAHGHAEL 60 RRFPGSRTSF PPRA |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU954314 | 3e-86 | EU954314.1 Zea mays clone 1462258 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815379.1 | 5e-48 | zinc finger CCCH domain-containing protein 13-like isoform X3 | ||||
Swissprot | Q6H7U2 | 3e-22 | C3H13_ORYSJ; Zinc finger CCCH domain-containing protein 13 | ||||
TrEMBL | A0A2T7F274 | 1e-46 | A0A2T7F274_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T8KU00 | 1e-46 | A0A2T8KU00_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa03280.1.p | 2e-46 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3882 | 29 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21810.1 | 4e-09 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Pahal.A00388.1 |
Publications ? help Back to Top | |||
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