PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A00227.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Nin-like

Protein Properties

Length: 755aa MW: 79673.6 Da PI: 5.4664

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A00227.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	86.4	2.4e-27	515	564	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek++sle+l+ yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki++ Pahal.A00227.1 515 EKTVSLEVLQLYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISK 564 799*********************************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.291	501	585	IPR003035	RWP-RK domain
Pfam	PF02042	8.4E-24	517	564	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.58E-19	648	719	No hit	No description
PROSITE profile	PS51745	20.208	649	742	IPR000270	PB1 domain
SMART	SM00666	8.9E-18	649	742	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	4.4E-23	650	717	No hit	No description
Pfam	PF00564	3.1E-14	650	719	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 755 aa Download sequence Send to blast
MVMEMDADMD GVIQRFDHRL DRDGGSRGTD ACGSDRDRSR GGSGGGGGEG AEGKEEVGGG 60 GAVKERIARA LRIYKEAAAG DGGGALVQVW APVRDGGRRV LATRDQPFVL AAPQCHRLFQ 120 YRTVSLTHAF PVGGAGVPGE RGLPGRVFDA GAPEWTPNVQ YYGTGEYARI SYALIYDIQA 180 ALALPILDPG TGSCVAVVEL VTTSPRLRFA AEVDKLSKAL QAVALRGSEI CRPAAEVSDD 240 EAAQLAMSEV SDILTTVGEA HKLPLAQAWV RCKRCSTSTE HASLMAAGTP YYLADADQSL 300 IGFREACVEH HLRPGRGGLV EEAAAARGPR FCADVTKYSM DAYPLAHHAR FCGLAGCLAV 360 CVQLRRDNND NGSMDDGSRE QCVLEFFVPP DCREGAAQKA AADAVAATVT ERFGNAHLKA 420 IDISGLQDLA FEIVADGECV LRPDRVVMAD APEVELNDHG GGDERDSDEE GLHLASAVGA 480 ADIEAPKMNN DDENGGEDPR SQVGEKKKKA KRKGEKTVSL EVLQLYFSGS LKDAARSLGV 540 CPTTMKRICR QHGISRWPFR KISKANRSLD KIKRVFESVP GSTNPMAAST PAAAVSHQAP 600 AAATARGGHA LPCLSSALGV TSSQGSCQAP PPPKDAALRT PLHGVDAGVV TVKASYRGDI 660 IRFRVPSSAG VATVKGEVAK RLGLEASEFD VKYLDDDNEW VLLSCDDDFQ ECLEVVPALS 720 GASSLSGSAL AQPVVRLMVQ EVPENHGSSC GSSE*

Sequence ? help Back to Top

Protein Sequence Length: 755 aa Download sequence Send to blast

MVMEMDADMD GVIQRFDHRL DRDGGSRGTD ACGSDRDRSR GGSGGGGGEG AEGKEEVGGG  60
GAVKERIARA LRIYKEAAAG DGGGALVQVW APVRDGGRRV LATRDQPFVL AAPQCHRLFQ  120
YRTVSLTHAF PVGGAGVPGE RGLPGRVFDA GAPEWTPNVQ YYGTGEYARI SYALIYDIQA  180
ALALPILDPG TGSCVAVVEL VTTSPRLRFA AEVDKLSKAL QAVALRGSEI CRPAAEVSDD  240
EAAQLAMSEV SDILTTVGEA HKLPLAQAWV RCKRCSTSTE HASLMAAGTP YYLADADQSL  300
IGFREACVEH HLRPGRGGLV EEAAAARGPR FCADVTKYSM DAYPLAHHAR FCGLAGCLAV  360
CVQLRRDNND NGSMDDGSRE QCVLEFFVPP DCREGAAQKA AADAVAATVT ERFGNAHLKA  420
IDISGLQDLA FEIVADGECV LRPDRVVMAD APEVELNDHG GGDERDSDEE GLHLASAVGA  480
ADIEAPKMNN DDENGGEDPR SQVGEKKKKA KRKGEKTVSL EVLQLYFSGS LKDAARSLGV  540
CPTTMKRICR QHGISRWPFR KISKANRSLD KIKRVFESVP GSTNPMAAST PAAAVSHQAP  600
AAATARGGHA LPCLSSALGV TSSQGSCQAP PPPKDAALRT PLHGVDAGVV TVKASYRGDI  660
IRFRVPSSAG VATVKGEVAK RLGLEASEFD VKYLDDDNEW VLLSCDDDFQ ECLEVVPALS  720
GASSLSGSAL AQPVVRLMVQ EVPENHGSSC GSSE*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823617.1	0.0	protein NLP3-like
TrEMBL	A0A2S3GLE7	0.0	A0A2S3GLE7_9POAL; Uncharacterized protein
STRING	Si016430m	0.0	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6269	29	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	1e-110	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Pahal.A00227.1