PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.A00175.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

BES1

Protein Properties

Length: 651aa MW: 73334.9 Da PI: 6.4656

Description

BES1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.A00175.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF822	159.5	2.3e-49	43	181	5	134
DUF822 5 rkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspesslq.s 96 +++++E+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+r+AGw+v++DGtt+r + +p+ + + g ++ as e++ + Pahal.A00175.2 43 DREREREKERTKLRERHRRAITSRMLAGLRQHGNFPLPARADMNDVLAALARAAGWTVHPDGTTFRSSNQPPlpPPPPQLGMFQVASGETPAFiN 137 6799*****************************************************************99989999***********9 PP DUF822 97 slkssalaspvesysaspksssfpspssldsislasa......a 134 +l+s+++ +p++s+++ +++++++spsslds+ ++ + Pahal.A00175.2 138 TLNSYTIGTPLDSQASALQTDDSLSPSSLDSVVAERSiktenfG 181 ********************************987665554442 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05687	3.2E-47	42	191	IPR008540	BES1/BZR1 plant transcription factor, N-terminal
Gene3D	G3DSA:3.20.20.80	9.9E-170	210	644	IPR013781	Glycoside hydrolase, catalytic domain
SuperFamily	SSF51445	2.81E-167	211	644	IPR017853	Glycoside hydrolase superfamily
Pfam	PF01373	9.0E-81	234	605	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.8E-52	248	262	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.8E-52	269	287	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.8E-52	291	312	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.8E-52	384	406	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.8E-52	457	476	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.8E-52	491	507	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.8E-52	508	519	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.8E-52	526	549	IPR001554	Glycoside hydrolase, family 14
PRINTS	PR00750	2.8E-52	564	586	IPR001554	Glycoside hydrolase, family 14

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000272	Biological Process	polysaccharide catabolic process
GO:0048831	Biological Process	regulation of shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0016161	Molecular Function	beta-amylase activity

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MSMKLPHPPL GEEELSPPPQ RRPRGFASGP APSAGAPPRR RGDREREREK ERTKLRERHR 60 RAITSRMLAG LRQHGNFPLP ARADMNDVLA ALARAAGWTV HPDGTTFRSS NQPPLPPPPP 120 QLGMFQVASG ETPAFINTLN SYTIGTPLDS QASALQTDDS LSPSSLDSVV AERSIKTENF 180 GNSSSVNSLN CMDNNQLLRS SAMLAGDYTK TPYIPVYASL PMGIINSHCQ LVDPEGVRTE 240 LRHLKSLNVD GVIVYCWWGI VEAWIPRKYE WSGYRDLFGI IKEFKLKVQV VLSFHGSGET 300 GSGDVLISLP NWIMEIAKEN QDIFFTDREG RRNTECLSWG IDKERVLRGR SGIEVYFDFM 360 RSFHMEFRNL SEEGLISAIE IGLGASGELR YPSFPERMGW KYPGIGEFQC YDRYMQKNLR 420 QSALSRGHLF WARGPDNAGY YNSRPHETGF FCDGGDYDSY YGRFFLNWYS GILIDHVDQV 480 LSLAALAFDG AEIVVKIPSI YWWYRTASHA AELTAGFYNP TNRDGYSPVL KMLKKHSVIL 540 KLVCYGEEFT VQENDEAFVD PEGLTWQLMN AAWDHGLPLC IESALPCLDG DMYSQILDTA 600 KPRNDPDRHH ASFFAYRQQP PFLLQRDACY PELRTFVKCM HGEAPQNGEG *

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MSMKLPHPPL GEEELSPPPQ RRPRGFASGP APSAGAPPRR RGDREREREK ERTKLRERHR  60
RAITSRMLAG LRQHGNFPLP ARADMNDVLA ALARAAGWTV HPDGTTFRSS NQPPLPPPPP  120
QLGMFQVASG ETPAFINTLN SYTIGTPLDS QASALQTDDS LSPSSLDSVV AERSIKTENF  180
GNSSSVNSLN CMDNNQLLRS SAMLAGDYTK TPYIPVYASL PMGIINSHCQ LVDPEGVRTE  240
LRHLKSLNVD GVIVYCWWGI VEAWIPRKYE WSGYRDLFGI IKEFKLKVQV VLSFHGSGET  300
GSGDVLISLP NWIMEIAKEN QDIFFTDREG RRNTECLSWG IDKERVLRGR SGIEVYFDFM  360
RSFHMEFRNL SEEGLISAIE IGLGASGELR YPSFPERMGW KYPGIGEFQC YDRYMQKNLR  420
QSALSRGHLF WARGPDNAGY YNSRPHETGF FCDGGDYDSY YGRFFLNWYS GILIDHVDQV  480
LSLAALAFDG AEIVVKIPSI YWWYRTASHA AELTAGFYNP TNRDGYSPVL KMLKKHSVIL  540
KLVCYGEEFT VQENDEAFVD PEGLTWQLMN AAWDHGLPLC IESALPCLDG DMYSQILDTA  600
KPRNDPDRHH ASFFAYRQQP PFLLQRDACY PELRTFVKCM HGEAPQNGEG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wdq_A	1e-121	213	643	11	444	Beta-amylase
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00543	DAP	Transfer from AT5G45300	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025811466.1	0.0	beta-amylase 8 isoform X2
Swissprot	Q9FH80	0.0	BAM8_ARATH; Beta-amylase 8
TrEMBL	A0A2S3GL09	0.0	A0A2S3GL09_9POAL; Beta-amylase
STRING	Pavir.Aa03184.1.p	0.0	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45300.2	0.0	beta-amylase 2

Link Out ? help Back to Top
Phytozome	Pahal.A00175.2

Publications ? help Back to Top
Soyk S, et al. The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation. Plant Cell, 2014. 26(4): p. 1746-1763 [PMID:24748042]