PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Pahal.A00166.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 355aa MW: 37589.9 Da PI: 5.2315 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 68.5 | 1.1e-21 | 250 | 312 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++ Pahal.A00166.2 250 ERELKKQKRKQSNRESARRSRLRKQAECEELGQRAEALRSENSSLRAELERIRKEYEQLLSQN 312 89**********************************************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF07777 | 2.3E-28 | 1 | 97 | IPR012900 | G-box binding protein, multifunctional mosaic region |
Pfam | PF16596 | 1.1E-21 | 127 | 232 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 4.8E-17 | 247 | 311 | No hit | No description |
SMART | SM00338 | 8.1E-21 | 250 | 314 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.2E-20 | 250 | 312 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.265 | 252 | 315 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 8.75E-11 | 253 | 310 | No hit | No description |
CDD | cd14702 | 4.95E-25 | 255 | 305 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 257 | 272 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 355 aa Download sequence Send to blast |
MGSNDPSTPS KAPKASEQDQ PSATTSGAPA SVYPEWPSFQ AYSAIPPHGF FPPTVAANPQ 60 AHPYMWGAQH MVPPYGTPPS PYVVYPPGTV YAHPSTPPGM HPFSHYSMPT NGHAETPGAA 120 PSAPEMNGKN EPGRMSAPSA NGITSHSESG SESESEGSDA NSQNDSQSKD NDGKEDGSSQ 180 NGISYSVSQG MLNQTMPMVP IQPGAMVGVP GSTANLNIGM DYWAAPGSAT VPATQGKATS 240 GSARGDQWDE RELKKQKRKQ SNRESARRSR LRKQAECEEL GQRAEALRSE NSSLRAELER 300 IRKEYEQLLS QNASLKEKLG ATSDSIPDMN EQNDGGGSGY KKQPDSDAQP GNES* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 266 | 272 | RRSRLRK |
2 | 266 | 273 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025799000.1 | 0.0 | transcription factor HBP-1a-like isoform X2 | ||||
Swissprot | P23922 | 1e-146 | HBP1A_WHEAT; Transcription factor HBP-1a | ||||
TrEMBL | A0A2S3GKT8 | 0.0 | A0A2S3GKT8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Aa03436.1.p | 0.0 | (Panicum virgatum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G32150.1 | 1e-88 | basic region/leucine zipper transcription factor 68 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Pahal.A00166.2 |
Publications ? help Back to Top | |||
---|---|---|---|
|