PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.A00166.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 362aa    MW: 38358.8 Da    PI: 5.2314
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.A00166.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.41.1e-21257319163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     e+elk+++rkq+NRe+ArrsR+RK+ae+eeL +++++L +eN++L+ ele+++ke+++l s++
  Pahal.A00166.1 257 ERELKKQKRKQSNRESARRSRLRKQAECEELGQRAEALRSENSSLRAELERIRKEYEQLLSQN 319
                     89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.4E-28197IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.9E-23127239No hitNo description
Gene3DG3DSA:1.20.5.1709.1E-17255318No hitNo description
SMARTSM003388.1E-21257321IPR004827Basic-leucine zipper domain
PfamPF001704.4E-20257319IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.265259322IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-11260317No hitNo description
CDDcd147023.11E-25262312No hitNo description
PROSITE patternPS000360264279IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGSNDPSTPS KAPKASEQDQ PSATTSGAPA SVYPEWPSFQ AYSAIPPHGF FPPTVAANPQ  60
AHPYMWGAQH MVPPYGTPPS PYVVYPPGTV YAHPSTPPGM HPFSHYSMPT NGHAETPGAA  120
PSAPEMNGKN EPGRMSAPSA NGITSHSESG SESESEGSDA NSQNDSQSKD NDGKEDGVFC  180
QYAGSSQNGI SYSVSQGMLN QTMPMVPIQP GAMVGVPGST ANLNIGMDYW AAPGSATVPA  240
TQGKATSGSA RGDQWDEREL KKQKRKQSNR ESARRSRLRK QAECEELGQR AEALRSENSS  300
LRAELERIRK EYEQLLSQNA SLKEKLGATS DSIPDMNEQN DGGGSGYKKQ PDSDAQPGNE  360
S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273279RRSRLRK
2273280RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025798999.10.0transcription factor HBP-1a-like isoform X1
SwissprotP239221e-143HBP1A_WHEAT; Transcription factor HBP-1a
TrEMBLA0A2S3GL790.0A0A2S3GL79_9POAL; Uncharacterized protein
STRINGPavir.Aa03436.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.17e-89basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Tabata T,Nakayama T,Mikami K,Iwabuchi M
    HBP-1a and HBP-1b: leucine zipper-type transcription factors of wheat.
    EMBO J., 1991. 10(6): p. 1459-67
    [PMID:2026143]
  2. Tabata T, et al.
    A protein that binds to a cis-acting element of wheat histone genes has a leucine zipper motif.
    Science, 1989. 245(4921): p. 965-7
    [PMID:2772648]
  3. Mikami K, et al.
    Developmental and tissue-specific regulation of the gene for the wheat basic/leucine zipper protein HBP-1a(17) in transgenic Arabidopsis plants.
    Mol. Gen. Genet., 1995. 248(5): p. 573-82
    [PMID:7476857]
  4. Nakayama T,Okanami M,Meshi T,Iwabuchi M
    Dissection of the wheat transcription factor HBP-1a(17) reveals a modular structure for the activation domain.
    Mol. Gen. Genet., 1997. 253(5): p. 553-61
    [PMID:9065688]
  5. Okanami M,Meshi T,Tamai H,Iwabuchi M
    HALF-1, a bZIP-type protein, interacting with the wheat transcription factor HBP-1a contains a novel transcriptional activation domain.
    Genes Cells, 1996. 1(1): p. 87-99
    [PMID:9078369]