PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl017930

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

WRKY

Protein Properties

Length: 323aa MW: 36613.4 Da PI: 9.2987

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55340358	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.5	8.5e-31	246	304	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+W KYGqK+vk++ +prsYYrCt+++C+vkk+v+r ++dp++v++tYeg H h+ Pgl017930 246 LDDGYRWGKYGQKSVKNNLYPRSYYRCTHQTCSVKKQVQRLSRDPEIVVTTYEGIHMHP 304 59********************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	6	1	27	No hit	No description
Gene3D	G3DSA:2.20.25.80	1.6E-31	231	305	IPR003657	WRKY domain
SuperFamily	SSF118290	2.88E-27	238	305	IPR003657	WRKY domain
PROSITE profile	PS50811	28.024	241	306	IPR003657	WRKY domain
SMART	SM00774	3.7E-35	246	305	IPR003657	WRKY domain
Pfam	PF03106	1.5E-24	247	304	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MSARMKIDSA TRHNANFFQY SSGGYACPSD DLVFSPNSLV QRPVSWVDTN LMNPDLSSTA 60 NSSCFPRING GINGLSSSKT HSPPASSHSL TEFMQTQSRA HDQGKNEHVN SMKNIQQQQQ 120 DQMNQTTCNP NIWKPSWLSQ TTTSDKEEAV QRREFNVPGG FPESNSSGDT QARLSAMRGI 180 TGLEGQYFPA VREEHNKGIS ESERLQSGEN DGGNVKDNRS RSRGKLEKRI RRPRYAFQTR 240 SQVDILDDGY RWGKYGQKSV KNNLYPRSYY RCTHQTCSVK KQVQRLSRDP EIVVTTYEGI 300 HMHPSEKSME SFDHILNQMQ FLS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	2e-23	238	303	9	74	Probable WRKY transcription factor 4
2lex_A	2e-23	238	303	9	74	Probable WRKY transcription factor 4
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A9NZ05	0.0	A9NZ05_PICSI; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	7e-47	WRKY DNA-binding protein 75