PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl017808 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 515aa MW: 58208.7 Da PI: 4.7002 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 158.1 | 3.7e-49 | 6 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+++yLk k+++ + evi++vd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatg+d++++s + Pgl017808 6 LPPGFRFHPTDEELISCYLKGKLNHGLkAAELEVISKVDLYKLEPWDLPeKsFLPSTDMEWYFFSPRDRKYPNGSRTNRATEAGYWKATGRDRKIYS-RA 104 79********************987763555689**************95344556788**************************************.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 +++g+kk f +grap+ge+tdWvmheyrle Pgl017808 105 STIGIKKDSSFLRGRAPQGERTDWVMHEYRLE 136 99****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.89E-57 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.766 | 6 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-25 | 7 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 515 aa Download sequence Send to blast |
MGTFALPPGF RFHPTDEELI SCYLKGKLNH GLKAAELEVI SKVDLYKLEP WDLPEKSFLP 60 STDMEWYFFS PRDRKYPNGS RTNRATEAGY WKATGRDRKI YSRASTIGIK KDSSFLRGRA 120 PQGERTDWVM HEYRLEENES EAGPCLQNAF VLCRVFKKSG LGEKSGEQYT APVEKGDLSL 180 IKKNLSPGYF GDIEVHSEEQ SKPVEGIDAN SXFTIKNLIE ILNDTTGDSA PLNKWLDILL 240 DDTNSNSSCV ALDEDTIHTQ VDAMPDTPRT QCDSACLPFD ESEFPQIPVN ISFSQYGVPN 300 VSLDAYFEEE RMLDEMLSAA SHDYTNSKAY HSFLGDTFAD ILNGGYIKVK HLLPSMEELE 360 NRDSCLWEVP NPSLHHEGTG IQICSRSPVL QSHKQGILSE GTAARRVRMQ LHKMEDSVER 420 NEKDVNVRHS QNMSNDWYDS KSDSTSCPEM QQLHFDQFDG HKCDSENIRE NEDSVPEALA 480 TYMAGRIDGF ILVTRPYGLC YTLCISGETF LDLGR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-48 | 4 | 164 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-48 | 4 | 164 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-48 | 4 | 164 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-48 | 4 | 164 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-48 | 4 | 164 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 2e-48 | 4 | 164 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 2e-48 | 4 | 164 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 2e-48 | 4 | 164 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 2e-48 | 4 | 164 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 2e-48 | 4 | 164 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 2e-48 | 4 | 164 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 2e-48 | 4 | 164 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 2e-48 | 4 | 164 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 2e-48 | 4 | 164 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.22805 | 0.0 | root| somatic embryo| stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LLW8 | 0.0 | B8LLW8_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-73 | NAC domain containing protein 28 |