PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017756
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 338aa    MW: 38099.2 Da    PI: 9.0342
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55349353PU_refUnigeneView CDS
PUT-175a-Picea_glauca-43025PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.83.6e-19166200135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+ C+t  TplWR+gpdg+k+LCnaCG++++k g+
  Pgl017756 166 CAECKTDRTPLWRNGPDGPKSLCNACGIRFKKIGK 200
                ********************************886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.33E-13159206No hitNo description
PROSITE profilePS5011412.848160196IPR000679Zinc finger, GATA-type
SMARTSM004014.8E-17160212IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.4E-16164201IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.15E-13165225No hitNo description
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
PfamPF003202.4E-17166200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MEETDDEQTQ HSLRTVQPEA FGSRIFWHSN EIFRSNLEIK GRIKSTVRVS SVRSGAESNI  60
CELKLEDSEE DLPDGSQIDR ALSIGMQMQM PYDADPRIKL RRSVIIDPLQ EVGDEDERKL  120
QENRKKSSAK ESLQSLRRFL QIGENHSDKT GATDAKFPDR AVARTCAECK TDRTPLWRNG  180
PDGPKSLCNA CGIRFKKIGK REQQKTGSRL PPLSSVRQMT GKRKQQDRDE YDLLPQDAAI  240
AAARYPVRKK NIAAATGGRH RDRRRFVEES NSTERRSVED SSSTERRFLN NGSVAGDEKG  300
ETSTNSVMKM RRSFAKDEEE GAVLLMGLSC GLVNAXIX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.58790.0root
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18380.17e-18GATA transcription factor 20