PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl017673 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | GATA | ||||||||
Protein Properties | Length: 438aa MW: 48792.5 Da PI: 5.3361 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 54.8 | 1.2e-17 | 314 | 348 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C +C t kTp+WR gp g+ktLCnaCG++y++ +l Pgl017673 314 CMHCDTMKTPQWRTGPMGPKTLCNACGVRYKSGRL 348 99*****************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 5.0E-16 | 308 | 358 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 11.714 | 308 | 344 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.3E-14 | 312 | 346 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 7.13E-15 | 312 | 371 | No hit | No description |
CDD | cd00202 | 2.88E-12 | 313 | 360 | No hit | No description |
Pfam | PF00320 | 4.9E-15 | 314 | 348 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 314 | 339 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 438 aa Download sequence Send to blast |
XPALLQLGAR FWSTGSNTHF EISKDSTDLT LYCEYRWKGM EATDYLYGTN YGTPFLDGKK 60 SSGKFTELKN GVQLQDFFHI DDLSDFSNEE IAGPIGDDSN NWPSCTTTAA AAGSSTITLT 120 ETVSCNSSLD GKSFRAYNVL ETDENNNGHL CVPCDDLAEL EWLSNFVEDS FSTEQAPKPI 180 FPPNFGDVRT VKEEEKPHIA NPIRSSSPMS GLDTSSCSWK TSTCSWKTPS FSPETPVPGR 240 ARSKRSRAPA CNWSSRIVSP ASSASALENG PTSSVLSSDS EFFAESYFPA KKPAKISHGN 300 KKREHEQQTQ IRKCMHCDTM KTPQWRTGPM GPKTLCNACG VRYKSGRLVP EYRPAASPTF 360 VVSKHSNSHR KVIEMRRQKE MQVALQQASK LYPNDKEGDE DGDEYEEDED GSDGQYPHFG 420 SDDDNYLVHT NQDYRHFI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25830.1 | 2e-57 | GATA transcription factor 12 |