PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017673
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GATA
Protein Properties Length: 438aa    MW: 48792.5 Da    PI: 5.3361
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55345189PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.2e-17314348135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Pgl017673 314 CMHCDTMKTPQWRTGPMGPKTLCNACGVRYKSGRL 348
                99*****************************9885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004015.0E-16308358IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.714308344IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-14312346IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-15312371No hitNo description
CDDcd002022.88E-12313360No hitNo description
PfamPF003204.9E-15314348IPR000679Zinc finger, GATA-type
PROSITE patternPS003440314339IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
XPALLQLGAR FWSTGSNTHF EISKDSTDLT LYCEYRWKGM EATDYLYGTN YGTPFLDGKK  60
SSGKFTELKN GVQLQDFFHI DDLSDFSNEE IAGPIGDDSN NWPSCTTTAA AAGSSTITLT  120
ETVSCNSSLD GKSFRAYNVL ETDENNNGHL CVPCDDLAEL EWLSNFVEDS FSTEQAPKPI  180
FPPNFGDVRT VKEEEKPHIA NPIRSSSPMS GLDTSSCSWK TSTCSWKTPS FSPETPVPGR  240
ARSKRSRAPA CNWSSRIVSP ASSASALENG PTSSVLSSDS EFFAESYFPA KKPAKISHGN  300
KKREHEQQTQ IRKCMHCDTM KTPQWRTGPM GPKTLCNACG VRYKSGRLVP EYRPAASPTF  360
VVSKHSNSHR KVIEMRRQKE MQVALQQASK LYPNDKEGDE DGDEYEEDED GSDGQYPHFG  420
SDDDNYLVHT NQDYRHFI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-57GATA transcription factor 12