PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pgl017570

Organism

Picea glauca

Taxonomic ID

3330

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea

Family

NAC

Protein Properties

Length: 270aa MW: 30340.4 Da PI: 7.0589

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Pgl#S55337647	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	159.9	9.8e-50	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lp+GfrF+Ptdeel+ +yLkkkv++++++ +vi+e+d+yk++PwdLp+k+ +ekewyfFs+rd++y++g +nr++ sgyWkatg+dk+++ +++++v Pgl017570 14 LPVGFRFEPTDEELLIYYLKKKVSSSPFPG-SVIAEIDLYKHDPWDLPAKAFFGEKEWYFFSPRDREYPNGAPPNRSAGSGYWKATGTDKPIVITSSQKV 112 79*************************9.99***********8777899***************************************** PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk+Lvfykg +g kt+W+mheyrl Pgl017570 113 GVKKSLVFYKGMPLQGLKTNWIMHEYRL 140 ************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-59	8	164	IPR003441	NAC domain
PROSITE profile	PS51005	57.1	14	165	IPR003441	NAC domain
Pfam	PF02365	8.0E-27	15	140	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MEGLAFHQQM LLQLPVGFRF EPTDEELLIY YLKKKVSSSP FPGSVIAEID LYKHDPWDLP 60 AKAFFGEKEW YFFSPRDREY PNGAPPNRSA GSGYWKATGT DKPIVITSSQ KVGVKKSLVF 120 YKGMPLQGLK TNWIMHEYRL AETLPTKRKG SLRLDDWVLC RIYEKVSYSP MIVSCQDVEA 180 LSPDVRRTRQ KSAMPTFSSF SRLLLRDGPF MESLLSHATS DANNAAVSST ESLSSLQDDL 240 PQRNSSEGGS HVSMSLGFNG DEVSSEYPAT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-72	12	167	15	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-72	12	167	15	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-72	12	167	15	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-72	12	167	15	167	NO APICAL MERISTEM PROTEIN
3swm_A	2e-72	12	167	18	170	NAC domain-containing protein 19
3swm_B	2e-72	12	167	18	170	NAC domain-containing protein 19
3swm_C	2e-72	12	167	18	170	NAC domain-containing protein 19
3swm_D	2e-72	12	167	18	170	NAC domain-containing protein 19
3swp_A	2e-72	12	167	18	170	NAC domain-containing protein 19
3swp_B	2e-72	12	167	18	170	NAC domain-containing protein 19
3swp_C	2e-72	12	167	18	170	NAC domain-containing protein 19
3swp_D	2e-72	12	167	18	170	NAC domain-containing protein 19
4dul_A	2e-72	12	167	15	167	NAC domain-containing protein 19
4dul_B	2e-72	12	167	15	167	NAC domain-containing protein 19
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	191	RRTRQKS

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Pgl.25653	0.0	needle

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269\|PubMed:21107887}.
Uniprot	TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269\|PubMed:21107887}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000305\|PubMed:21107887}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013464756.1	2e-81	NAC transcription factor 56
Swissprot	Q8GY42	4e-77	NAC25_ARATH; NAC transcription factor 25
TrEMBL	D5ABS0	0.0	D5ABS0_PICSI; Uncharacterized protein
STRING	ERN03380	1e-79	(Amborella trichopoda)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61110.1	2e-79	NAC domain containing protein 25