PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl017540
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 256aa    MW: 28664.4 Da    PI: 9.6564
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342008PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.3e-1368117455
                HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                +++++Er+RR+++++ f  Lr+llP  +     +K s  + ++ Av+YI +Lq
  Pgl017540  68 NAKIIERQRRREMKTLFLALRSLLPDeN---LRGKRSVTDQVQAAVNYILHLQ 117
                789***********************66...9********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.05564116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.1E-1366131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1168132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.0E-1068117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-968119No hitNo description
SMARTSM003531.2E-570122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MNFPSGSHSA SPAHVPQGFV DRNPATPTGH HNLLSHPYSM ATICTSNLPG HGQSRNRLTS  60
AVPSGKPNAK IIERQRRREM KTLFLALRSL LPDENLRGKR SVTDQVQAAV NYILHLQQKM  120
EDLSTERDKL KAIAKSERIS NVSLDGEQFS CNQIICKYPL FRGSDGDQFP AAEIKSVGSG  180
VQVSTKTFEH QVLYSDLLQA LEEAGLQVLS ATRFAINNNR VFHTIHSKVH DHNAFKIETL  240
NEKLWHFIRN GYSQDL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLB8LNH57e-55B8LNH5_PICSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.14e-22bHLH family protein