PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl017062 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | ZF-HD | ||||||||||||
Protein Properties | Length: 247aa MW: 27163.7 Da PI: 8.4936 | ||||||||||||
Description | ZF-HD family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.3 | 5.8e-31 | 53 | 104 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 +rY+eC++NhAa++Ggha+DGCgEfmp+ + +alkCaACgCHRnFHRreve Pgl017062 53 VLRYRECQRNHAANIGGHALDGCGEFMPA-----EDDALKCAACGCHRNFHRREVEG 104 679*************************9.....3579****************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 2.0E-18 | 53 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 5.1E-26 | 54 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 2.6E-26 | 55 | 102 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.54 | 56 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 8.1E-30 | 171 | 246 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.93E-18 | 172 | 245 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.2E-24 | 184 | 240 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MPAPYGLYPN GNGNGNAAII MVLPHDESIS NPLNPTNPRN PMEAAAAPPP TKVLRYRECQ 60 RNHAANIGGH ALDGCGEFMP AEDDALKCAA CGCHRNFHRR EVEGDEQPPP TCECCLRKKR 120 GGASSSGPGS PVVPYYPLPL PHGSSAPHML MALSSGLTES DDPDGNTNNN SNNNLSHHHH 180 RGMKKRFRTK FSQDQKEKMY MFADKMGWRM QKQDEAIVQQ FCNEIGVGKG VLKVWMHNNK 240 HTLGKKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 2e-22 | 185 | 242 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.9473 | 0.0 | root| vegetative bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006827241.1 | 3e-64 | zinc-finger homeodomain protein 2 | ||||
Swissprot | A2YWA6 | 5e-51 | ZHD2_ORYSI; Zinc-finger homeodomain protein 2 | ||||
Swissprot | Q6ZB90 | 5e-51 | ZHD2_ORYSJ; Zinc-finger homeodomain protein 2 | ||||
TrEMBL | A9NWR9 | 0.0 | A9NWR9_PICSI; Uncharacterized protein | ||||
STRING | ERM94478 | 1e-63 | (Amborella trichopoda) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28920.1 | 3e-47 | homeobox protein 34 |
Publications ? help Back to Top | |||
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