PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||||||
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TF ID | Pgl016989 | ||||||||||||||||
Organism | |||||||||||||||||
Taxonomic ID | |||||||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||||||||||
Protein Properties | Length: 237aa MW: 27683 Da PI: 10.0879 | ||||||||||||||||
Description | MIKC_MADS family protein | ||||||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.2 | 2.8e-30 | 27 | 76 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien + rqvtf+kRrng+lKKA+ELSvLCdaeva+i+fs++gklye++ Pgl016989 27 KRIENVTSRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSPRGKLYEFA 76 79***********************************************8 PP | |||||||
2 | K-box | 82.4 | 1e-27 | 95 | 188 | 4 | 97 |
K-box 4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 +++ +++++a++l++e+a++++ i+ L+ qR++lG++Les+ lk+L+qLe+q+e++l++iR++K+e+l++qi++l +ke+ l een L+k+ Pgl016989 95 DTTNTTKKQDAKYLKREIANMEETIKILELRQRKMLGKELESCALKDLNQLESQVERGLSRIRARKTEVLVDQIKQLERKERILTEENALLSKR 188 3445589999*******************************************************************************99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.015 | 19 | 79 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.7E-41 | 19 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-31 | 21 | 41 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.09E-33 | 21 | 101 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 21 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.09E-43 | 21 | 92 | No hit | No description |
Pfam | PF00319 | 4.9E-27 | 28 | 75 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-31 | 41 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.7E-31 | 56 | 77 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.3E-23 | 100 | 188 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.692 | 105 | 195 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 237 aa Download sequence Send to blast |
MSLVIGFEEK GKVEERRRMV RGKTQLKRIE NVTSRQVTFC KRRNGLLKKA YELSVLCDAE 60 VALIVFSPRG KLYEFANPSM QKMLERYEKC SEENDTTNTT KKQDAKYLKR EIANMEETIK 120 ILELRQRKML GKELESCALK DLNQLESQVE RGLSRIRARK TEVLVDQIKQ LERKERILTE 180 ENALLSKRHG VDPRYVDGSV LTNPVSRFGS IQINEVETQL VIRQPNIRDH FLVNSFH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 2e-20 | 19 | 99 | 1 | 82 | MEF2 CHIMERA |
6byy_B | 2e-20 | 19 | 99 | 1 | 82 | MEF2 CHIMERA |
6byy_C | 2e-20 | 19 | 99 | 1 | 82 | MEF2 CHIMERA |
6byy_D | 2e-20 | 19 | 99 | 1 | 82 | MEF2 CHIMERA |
6bz1_A | 1e-20 | 19 | 99 | 1 | 82 | MEF2 CHIMERA |
6bz1_B | 1e-20 | 19 | 99 | 1 | 82 | MEF2 CHIMERA |
6bz1_C | 1e-20 | 19 | 99 | 1 | 82 | MEF2 CHIMERA |
6bz1_D | 1e-20 | 19 | 99 | 1 | 82 | MEF2 CHIMERA |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020220768.1 | 2e-71 | MADS-box protein SOC1 | ||||
Refseq | XP_029127631.1 | 2e-71 | MADS-box protein SOC1 | ||||
Refseq | XP_029127634.1 | 2e-71 | MADS-box protein SOC1 | ||||
Refseq | XP_029127637.1 | 2e-71 | MADS-box protein SOC1 | ||||
Refseq | XP_029127638.1 | 2e-71 | MADS-box protein SOC1 | ||||
Refseq | XP_029127641.1 | 2e-71 | MADS-box protein SOC1 | ||||
Refseq | XP_029127643.1 | 2e-71 | MADS-box protein SOC1 | ||||
TrEMBL | D5A8T5 | 1e-150 | D5A8T5_PICSI; Uncharacterized protein | ||||
STRING | XP_010255589.1 | 6e-68 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.3 | 2e-63 | AGAMOUS-like 42 |