PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl016719 | ||||||||||||
Common Name | HB6 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | HD-ZIP | ||||||||||||
Protein Properties | Length: 849aa MW: 93640.1 Da PI: 6.043 | ||||||||||||
Description | HD-ZIP family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.5 | 2.3e-18 | 17 | 75 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+++Le+++ ++++p+a +r++L +++ +++ +q+kvWFqNrR +ek+ Pgl016719 17 KYVRYTEEQVQALEKFYSECPKPNAFRRQQLIRECpllsNIEPKQIKVWFQNRRCREKQ 75 5678*****************************************************97 PP | |||||||
2 | START | 125.6 | 6.3e-40 | 174 | 376 | 2 | 203 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 +aeea+ e+++ka+ + W + + +++g++++ +++ +++++g a+ra+ +v m++ v+++l+d++ W +++++e+l + ++ ++++l +++++ Pgl016719 174 FAEEALSEFLAKATGTGIDWIQIPGMKPGPDSIGIVAVGHGCDGAAARACSLVGMESS-RVADVLKDRPGWFCDCRRMEILGAFTTSsgATVELLYSQMY 272 5899******************************************************.9**********************9876655*********** PP TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHH CS START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwva 198 +++l Rdf ++Ry+ l++ +v++++S++ pp + ++vRae+l Sg+li+p+++ +s v +v+h+dl++ +++lr++++s+++ ++k++ + Pgl016719 273 SPTTLTQaRDFCTLRYTSVLEDRNLVVCERSLNLGMVPP-NEGFVRAEMLSSGYLIRPCGGVGSIVYIVDHMDLEAGRAPEVLRPMYESSAILAQKMTIS 371 **999988*******************************.8**********************************************************9 PP HTXXX CS START 199 tlqrq 203 +l+++ Pgl016719 372 ALRHL 376 99886 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.175 | 12 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.3E-15 | 14 | 80 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.92E-16 | 16 | 80 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.85E-16 | 17 | 77 | No hit | No description |
Pfam | PF00046 | 7.8E-16 | 18 | 75 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-17 | 19 | 75 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 0.00378 | 69 | 106 | No hit | No description |
PROSITE profile | PS50848 | 23.795 | 164 | 388 | IPR002913 | START domain |
SMART | SM00234 | 2.1E-25 | 173 | 379 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.2E-34 | 174 | 381 | No hit | No description |
Pfam | PF01852 | 1.7E-37 | 175 | 376 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 2.6E-20 | 212 | 375 | IPR023393 | START-like domain |
Pfam | PF08670 | 4.5E-42 | 709 | 849 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 849 aa Download sequence Send to blast |
MAVARGKDGK YGFDSGKYVR YTEEQVQALE KFYSECPKPN AFRRQQLIRE CPLLSNIEPK 60 QIKVWFQNRR CREKQRKEAT RLLALNEKLK AMNKVLVKQN DNLSKQAFQF VSQNNFLRRQ 120 LKLLKEQSTN LDGSKDALVT TETSSISRLV SGLRKHRVPQ PPPWDVNPAW LLAFAEEALS 180 EFLAKATGTG IDWIQIPGMK PGPDSIGIVA VGHGCDGAAA RACSLVGMES SRVADVLKDR 240 PGWFCDCRRM EILGAFTTSS GATVELLYSQ MYSPTTLTQA RDFCTLRYTS VLEDRNLVVC 300 ERSLNLGMVP PNEGFVRAEM LSSGYLIRPC GGVGSIVYIV DHMDLEAGRA PEVLRPMYES 360 SAILAQKMTI SALRHLRSLA QEAAGEVVTG GTLQPAALRA LSLRIARSFN DAINSFPEDG 420 WFSVASDGID DISISLNSSW SPRTVGLKCS SSNNLWSDGD GGVLCAKASM LLQNVPPAVL 480 IRFLREHRSE WADWADCEHD VSCSATLRTR VYGAAALGGA ELGRREVPMP LAHSEHQEIM 540 ELVKFEGYDS ARDGALVSKE MYLLQLCNGI DETAIGDCAQ LVFAPVDGAL SDDIPLLPSG 600 FRVIPLDTDF MDGYGMSCTL DLASMLEGGS DMDAAKTETG ISSNNLRSIV TIAFQFGYET 660 HNCDSVSVAA RKYMRTVVAS VQRVAMAIAP RVGSTLGLRN LSGTSEVLTL VKRIVGSYRI 720 NFGMDLLRKQ PSNNEELFKM VWHHSDALIC CTCKSLPEFI FANEAALDML ETTSGGLQDL 780 RWDQTLDETE KKNAYSDITK VMQQGFAYLP AGIRLSSMGR PVAYERAMAW SIVDDNESMP 840 CVAFMFVNW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.5017 | 0.0 | stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010905420.1 | 0.0 | homeobox-leucine zipper protein HOX32 isoform X1 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | E7DX27 | 0.0 | E7DX27_PICGL; Class III homeodomain leucine zipper protein | ||||
STRING | GSMUA_Achr5P02420_001 | 0.0 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.2 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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