PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016619
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family GRAS
Protein Properties Length: 286aa    MW: 31193.8 Da    PI: 4.868
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55333015PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS239.61.3e-73442637239
       GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleav 106
                ++Aeavs++++e+a+++L ++ el++p+g+++qR+aayf+eA++arl++s  ++y+ lpp + s  +s++ ++a+++f+ +sP++kfsh+taNqaI ea+
  Pgl016619  44 SAAEAVSADNFEEANTILPQITELSTPYGNSVQRVAAYFAEAMSARLVNSYIGMYSPLPPIHMS--QSQKIVTAFQVFNGISPFVKFSHFTANQAIQEAF 141
                68********************************************************999998..5889999*************************** PP

       GRAS 107 egeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnl 206
                e+e +  iiD+di+qGlQWp L++ LasRp+gpp+++iTg++     s e+le+tg+rL++fA++l++pfef++ va+++ +l++e+L+v++g+alaV++
  Pgl016619 142 EREXESDIIDLDIMQGLQWPGLFHILASRPGGPPHVKITGLST----SLEALEATGKRLSDFAHTLNLPFEFHP-VAEKVGKLDPERLKVNRGDALAVHW 236
                *******************************************....9**************************.7************************ PP

       GRAS 207 vlqlhrlldesvsleserdevLklvkslsPkvv 239
                 +  h+l+d ++s ++    +L+l+++lsPkv 
  Pgl016619 237 LH--HSLYDVTGSDTN----TLRLLQRLSPKVC 263
                *9..999999999999....***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.01912286IPR005202Transcription factor GRAS
PfamPF035144.6E-7144263IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MAACIAMNTR FRGGDTSGEE IFVGGESDAN NSMINLTSEG ENSSAAEAVS ADNFEEANTI  60
LPQITELSTP YGNSVQRVAA YFAEAMSARL VNSYIGMYSP LPPIHMSQSQ KIVTAFQVFN  120
GISPFVKFSH FTANQAIQEA FEREXESDII DLDIMQGLQW PGLFHILASR PGGPPHVKIT  180
GLSTSLEALE ATGKRLSDFA HTLNLPFEFH PVAEKVGKLD PERLKVNRGD ALAVHWLHHS  240
LYDVTGSDTN TLRLLQRLSP KVCSLPPHGD LLIMDSSTEP NYGNTP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-1164526525247Protein SCARECROW
5b3h_D1e-1164526525247Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor involved in asymmetric cell division (By similarity). Required for differentiation of endodermis and graviresponses. {ECO:0000250, ECO:0000269|PubMed:16339910}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021622209.11e-117protein SCARECROW-like
RefseqXP_021685832.11e-117protein SCARECROW-like
SwissprotQ2Z2E91e-113SCR_IPONI; Protein SCARECROW
TrEMBLQ0MRQ21e-143Q0MRQ2_PINSY; SCARECROW
STRINGcassava4.1_001737m1e-117(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.11e-114GRAS family protein