PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016581
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family NAC
Protein Properties Length: 260aa    MW: 29383.3 Da    PI: 7.3549
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S59016283PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.41.6e-28191621128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                lp G++F+Ptd+el+ e+L+ kv+ ++      ++++   i    +i++++P++Lp  ++ +    +fF++ +k+y+tg+rk+r+++++  ++t   +++
  Pgl016581  19 LPYGVKFDPTDQELI-EHLQGKVAFDNsaahplIDEFIPtIGGEdGICYTHPEKLP-GISRDGLIRHFFHRPSKAYTTGTRKRRKIQTACDESTEGXNKM 116
                699************.99****998886665443332223554436**********.555555677******************9776666655555555 PP

        NAM  93 lsk........kgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 +         +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  Pgl016581 117 AQDwqnetclvNGKQKGCKKILVLYtnFGKHKKPEKTNWVMHQYHL 162
                555555566669999**********554799999**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-326181IPR003441NAC domain
PROSITE profilePS5100527.86119181IPR003441NAC domain
PfamPF023655.2E-1420162IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
XACAHQIERR EALKDWPGLP YGVKFDPTDQ ELIEHLQGKV AFDNSAAHPL IDEFIPTIGG  60
EDGICYTHPE KLPGISRDGL IRHFFHRPSK AYTTGTRKRR KIQTACDEST EGXNKMAQDW  120
QNETCLVNGK QKGCKKILVL YTNFGKHKKP EKTNWVMHQY HLGSQEEEKE GELVVSKIFY  180
QTQPRQCNWE KATYAGDACR ASVTEATQVS ERCTAGESVS STARHTYNHL EQQTKGTHSS  240
HNLSLAQSRL ESSDQVSISE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.277170.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in xylem formation (PubMed:25265867, PubMed:25535195). Promotes the expression of the secondary wall-associated transcription factor MYB46 (PubMed:25265867). Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867, PubMed:25535195). Acts as upstream regulator of NAC101/VND6 and LBD30/ASL19 (PubMed:25535195). {ECO:0000269|PubMed:25265867, ECO:0000269|PubMed:25535195}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026400259.11e-100NAC domain-containing protein 75-like isoform X2
RefseqXP_026423199.11e-100NAC domain-containing protein 75-like isoform X1
RefseqXP_026423200.11e-100NAC domain-containing protein 75-like isoform X1
RefseqXP_026423201.11e-100NAC domain-containing protein 75-like isoform X1
RefseqXP_026423202.11e-100NAC domain-containing protein 75-like isoform X1
RefseqXP_026423203.11e-100NAC domain-containing protein 75-like isoform X1
RefseqXP_026423204.11e-100NAC domain-containing protein 75-like isoform X2
RefseqXP_026423205.11e-100NAC domain-containing protein 75-like isoform X3
RefseqXP_026423207.11e-100NAC domain-containing protein 75-like isoform X4
RefseqXP_026423208.11e-100NAC domain-containing protein 75-like isoform X5
RefseqXP_026423209.11e-100NAC domain-containing protein 75-like isoform X6
SwissprotQ9M0F81e-100NAC75_ARATH; NAC domain-containing protein 75
TrEMBLE0ZFA11e-138E0ZFA1_PICSI; No apical meristem-like protein (Fragment)
STRINGCagra.0495s0057.1.p1e-100(Capsella grandiflora)
STRINGXP_010267095.11e-99(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-103NAC domain containing protein 75
Publications ? help Back to Top
  1. Droc G, et al.
    OryGenesDB: a database for rice reverse genetics.
    Nucleic Acids Res., 2006. 34(Database issue): p. D736-40
    [PMID:16381969]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]