PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Pgl016457 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | TALE | ||||||||||||
Protein Properties | Length: 462aa MW: 52244.3 Da PI: 5.7577 | ||||||||||||
Description | TALE family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.3 | 6.4e-09 | 392 | 425 | 22 | 55 |
SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 +yps++e+ LA+ +gL+++q+ +WF N+R ++ Pgl016457 392 WPYPSETEKIALAECTGLDQKQINNWFINQRKRH 425 69*****************************885 PP | |||||||
2 | ELK | 37.4 | 5.2e-13 | 345 | 365 | 1 | 21 |
ELK 1 ELKhqLlrKYsgyLgsLkqEF 21 ELK++Llr YsgyL+sLkqEF Pgl016457 345 ELKDHLLRRYSGYLSSLKQEF 365 9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 9.2E-19 | 200 | 244 | IPR005540 | KNOX1 |
Pfam | PF03790 | 3.9E-21 | 201 | 242 | IPR005540 | KNOX1 |
SMART | SM01256 | 8.0E-24 | 248 | 299 | IPR005541 | KNOX2 |
Pfam | PF03791 | 2.1E-22 | 251 | 297 | IPR005541 | KNOX2 |
Pfam | PF03789 | 4.9E-10 | 345 | 365 | IPR005539 | ELK domain |
PROSITE profile | PS51213 | 11.313 | 345 | 365 | IPR005539 | ELK domain |
SMART | SM01188 | 2.3E-7 | 345 | 366 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 12.001 | 365 | 428 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.97E-18 | 367 | 442 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.6E-12 | 367 | 432 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-27 | 370 | 430 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 2.31E-11 | 377 | 429 | No hit | No description |
Pfam | PF05920 | 3.3E-15 | 385 | 424 | IPR008422 | Homeobox KN domain |
PROSITE pattern | PS00027 | 0 | 403 | 426 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 462 aa Download sequence Send to blast |
XWLKDKECWD TYLDDAVKYK VLKIVFHSDM EHLNTAAAQA SSSLYGVGMA EYGDAGVSSM 60 MALITQHEPH DSESIMSTRM PSSFSSFHGH ADCLLSAAMF QASQGDHKLK RQPGMDQLVS 120 EQAGMSDSSM PSVKTEVCSG LRNQFEFHRE QTGNCYTDQS SNTPVNPLVT SLASQARGEA 180 QMIPSLDANS PHFNVDNEEY AIKSKILAHP QYPSLLGAYI DCQKIGAPPE AVARLDALTR 240 EYQNQQRRTV SIGMDPELDQ FMEAYCEILT KYHEELAKPF KEAMTFLMKI EAQFNSLGKG 300 TIRISPPAEN DEKTEGGGSS EEVEDGSGGE TDFQEVDHHA VEDRELKDHL LRRYSGYLSS 360 LKQEFVKKKK KGKLPKDARQ KLLDWWSLHD KWPYPSETEK IALAECTGLD QKQINNWFIN 420 QRKRHWKPSE DMHFMVMNSH SPHSAALYVE RHLMTEGYHL DC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.5884 | 0.0 | root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Appears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021640348.1 | 1e-112 | homeobox protein knotted-1-like 2 | ||||
Swissprot | Q41330 | 1e-109 | KN1_SOLLC; Homeotic protein knotted-1 | ||||
TrEMBL | Q9ZR91 | 0.0 | Q9ZR91_PICMA; Homeobox transcription factor SKN1 | ||||
STRING | cassava4.1_010084m | 1e-110 | (Manihot esculenta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G08150.1 | 5e-79 | KNOTTED-like from Arabidopsis thaliana |