PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016457
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family TALE
Protein Properties Length: 462aa    MW: 52244.3 Da    PI: 5.7577
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55346704PU_refUnigeneView CDS
PUT-175a-Picea_glauca-34731PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.4e-093924252255
                SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
   Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +yps++e+  LA+ +gL+++q+ +WF N+R ++
  Pgl016457 392 WPYPSETEKIALAECTGLDQKQINNWFINQRKRH 425
                69*****************************885 PP

2ELK37.45.2e-13345365121
        ELK   1 ELKhqLlrKYsgyLgsLkqEF 21 
                ELK++Llr YsgyL+sLkqEF
  Pgl016457 345 ELKDHLLRRYSGYLSSLKQEF 365
                9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012559.2E-19200244IPR005540KNOX1
PfamPF037903.9E-21201242IPR005540KNOX1
SMARTSM012568.0E-24248299IPR005541KNOX2
PfamPF037912.1E-22251297IPR005541KNOX2
PfamPF037894.9E-10345365IPR005539ELK domain
PROSITE profilePS5121311.313345365IPR005539ELK domain
SMARTSM011882.3E-7345366IPR005539ELK domain
PROSITE profilePS5007112.001365428IPR001356Homeobox domain
SuperFamilySSF466891.97E-18367442IPR009057Homeodomain-like
SMARTSM003892.6E-12367432IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-27370430IPR009057Homeodomain-like
CDDcd000862.31E-11377429No hitNo description
PfamPF059203.3E-15385424IPR008422Homeobox KN domain
PROSITE patternPS000270403426IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
XWLKDKECWD TYLDDAVKYK VLKIVFHSDM EHLNTAAAQA SSSLYGVGMA EYGDAGVSSM  60
MALITQHEPH DSESIMSTRM PSSFSSFHGH ADCLLSAAMF QASQGDHKLK RQPGMDQLVS  120
EQAGMSDSSM PSVKTEVCSG LRNQFEFHRE QTGNCYTDQS SNTPVNPLVT SLASQARGEA  180
QMIPSLDANS PHFNVDNEEY AIKSKILAHP QYPSLLGAYI DCQKIGAPPE AVARLDALTR  240
EYQNQQRRTV SIGMDPELDQ FMEAYCEILT KYHEELAKPF KEAMTFLMKI EAQFNSLGKG  300
TIRISPPAEN DEKTEGGGSS EEVEDGSGGE TDFQEVDHHA VEDRELKDHL LRRYSGYLSS  360
LKQEFVKKKK KGKLPKDARQ KLLDWWSLHD KWPYPSETEK IALAECTGLD QKQINNWFIN  420
QRKRHWKPSE DMHFMVMNSH SPHSAALYVE RHLMTEGYHL DC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.58840.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the apical meristems, in the newly emerged lateral primordia in the floral bud, in their vascular bundles and in the cortex parenchyma of the floral pedicle. Also present in the lateral tips of leaf primordia.
Functional Description ? help Back to Top
Source Description
UniProtAppears to be involved in meristem formation and in the regulation of leaf morphology. Misexpression makes the leaf more compound which is always associated with growth retardation and loss of apical dominance, resulting in dwarfed, bushy plants. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021640348.11e-112homeobox protein knotted-1-like 2
SwissprotQ413301e-109KN1_SOLLC; Homeotic protein knotted-1
TrEMBLQ9ZR910.0Q9ZR91_PICMA; Homeobox transcription factor SKN1
STRINGcassava4.1_010084m1e-110(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08150.15e-79KNOTTED-like from Arabidopsis thaliana