PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl016371 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | BBR-BPC | ||||||||
Protein Properties | Length: 252aa MW: 28087.9 Da PI: 9.3207 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 67.2 | 6.9e-21 | 1 | 156 | 1 | 157 |
GAGA_bind 1 mdddgsre.rnkgyyepaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.salpvg 98 mdddg + r++ e++ +k++ gl+ ms++aerda+i ern+a+sekkaa+ae++ a qrd a a+rn a++erd +++al +++++ + + + Pgl016371 1 MDDDGRLDiRHWDTLEQS--VKDHPGLKFMSVLAERDAAILERNTAFSEKKAAFAEKETAIFQRDVAYADRNTAILERDAAAAALDYARDGGWnGQRSLS 98 9************98887..*******************************************************************9998763567789 PP GAGA_bind 99 vqvlsgtksidslqqlsepqledsave.lreeeklealpieeaaeeakekkkkkkrqrak 157 +++ls++k ++ l + +p ++ ++ +r + p+ ea++ ++ +k+ k+++++k Pgl016371 99 CGTLSNAKILQVLAE--NPTFSAREYQtMRPINVAYPAPVLEAPPYEEPQKTAKRTSKKK 156 999999999998777..7888888888788888888999999888888777777655554 PP | |||||||
2 | GAGA_bind | 223.8 | 1.4e-68 | 158 | 252 | 207 | 301 |
GAGA_bind 207 tlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++P+PvC+CtG+ +qCY+WGnGGWqSaCCtt+iS+yPLP++++rrgaR+agrKmS+gaf+klLe+L aeGy+l+ p+DLk++WAkHGtnkfvtir Pgl016371 158 AMPIPVCTCTGVAQQCYRWGNGGWQSACCTTSISMYPLPMNPNRRGARVAGRKMSGGAFRKLLERLGAEGYNLNYPIDLKSYWAKHGTNKFVTIR 252 7*********************************************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01226 | 1.3E-95 | 1 | 252 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 1.6E-13 | 1 | 152 | IPR010409 | GAGA-binding transcriptional activator |
Pfam | PF06217 | 5.2E-66 | 158 | 252 | IPR010409 | GAGA-binding transcriptional activator |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDDDGRLDIR HWDTLEQSVK DHPGLKFMSV LAERDAAILE RNTAFSEKKA AFAEKETAIF 60 QRDVAYADRN TAILERDAAA AALDYARDGG WNGQRSLSCG TLSNAKILQV LAENPTFSAR 120 EYQTMRPINV AYPAPVLEAP PYEEPQKTAK RTSKKKDAMP IPVCTCTGVA QQCYRWGNGG 180 WQSACCTTSI SMYPLPMNPN RRGARVAGRK MSGGAFRKLL ERLGAEGYNL NYPIDLKSYW 240 AKHGTNKFVT IR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.10633 | 0.0 | somatic embryo| stem| vegetative bud |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006852993.3 | 8e-82 | LOW QUALITY PROTEIN: barley B recombinant-like protein D | ||||
Swissprot | Q5VSA8 | 5e-67 | BBRD_ORYSJ; Barley B recombinant-like protein D | ||||
TrEMBL | H1ZN64 | 1e-159 | H1ZN64_PICSI; GAGA-binding transcriptional activator |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G21240.2 | 2e-57 | basic pentacysteine 4 |
Publications ? help Back to Top | |||
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