PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl016330
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family B3
Protein Properties Length: 298aa    MW: 34101.8 Da    PI: 9.8822
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55335414PU_refUnigeneView CDS
PUT-175a-Picea_glauca-3737PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3521.2e-161362181298
                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                +  +l+l+  fa++      ++++l+l  +s ++W+v +   ++++   l++GWk+F  +n+L+egD+++F+ld+ ++ +l+v++fr
  Pgl016330 136 QGFWLSLSTGFAKRWLP--DQKIQLILVGLSEKKWSVCY--LGNRSNPGLSGGWKRFTLDNNLEEGDVCIFELDNMENYTLRVHIFR 218
                56789999999988843..35678***************..88888899***********************9988*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-19116218IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-20123218IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.605125220IPR003340B3 DNA binding domain
SMARTSM010195.3E-14125220IPR003340B3 DNA binding domain
CDDcd100177.48E-22134218No hitNo description
PfamPF023626.7E-14134218IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
SQTGLITTNY LEGEKEAGFP KSQPIVIDSE EESIQQTWTA DGSKMSVAEA VSSPTCAVNF  60
DKPLCHAVQL VKDTKIAKQT HHTPRDAGKN YVSTHYVSCR RLVTQAERKK TLQAAQSFKX  120
EQAIFFVNYE VTQVYQGFWL SLSTGFAKRW LPDQKIQLIL VGLSEKKWSV CYLGNRSNPG  180
LSGGWKRFTL DNNLEEGDVC IFELDNMENY TLRVHIFRVV ENCIPLKRVK GVRSNVKNGE  240
TRNQSVTVKS LSSNLGYLHI QRKYRTSLNQ HHILFVKLEN YRLMQIRGFK QLRMMSLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A8e-2010022124144B3 domain-containing transcription factor VRN1
4i1k_B8e-2010022124144B3 domain-containing transcription factor VRN1
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pgl.258080.0stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.15e-22B3 family protein