PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl016277 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 184aa MW: 20572.7 Da PI: 4.6569 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 48.1 | 3.9e-15 | 6 | 56 | 1 | 50 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpkk 50 lp Gfr hPtdeel+ +yLk k+++ ++ evi+evd+y++ePwdLp + Pgl016277 6 LPSGFRSHPTDEELIFNYLKGKLKNGLkASEVEVIPEVDLYRCEPWDLPVH 56 699*******************998764555689**************942 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.06E-13 | 3 | 56 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 10.81 | 6 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.5E-5 | 7 | 51 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
METFALPSGF RSHPTDEELI FNYLKGKLKN GLKASEVEVI PEVDLYRCEP WDLPVHSTEI 60 AVLERGRTCE GDLHGEASYV TGVLCYFGLL ELQSINDVGC MLEGIFYSRR VQIPMPMNCI 120 NYGGDTVMEA AFMREHPPFE GGIFVMGVSS SSVGALLWEV HLKHYGALME EVTLLIVAHS 180 SRVW |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.30948 | 0.0 | stem |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 3e-14 | NAC domain containing protein 28 |