 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Pgl016266 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
|
| Family |
GATA |
| Protein Properties |
Length: 377aa MW: 41197.8 Da PI: 6.4407 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| gnl|UG|Pgl#S55338702 | PU_ref | Unigene | View CDS |
| PUT-175a-Picea_glauca-16847 | PU_unref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 60.6 | 1.9e-19 | 253 | 287 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
Cs+C t kTp+WR gp+g+ktLCnaCG+++++ +l
Pgl016266 253 CSHCATQKTPQWRAGPEGPKTLCNACGVRFKSGRL 287
*******************************9986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 377 aa
Download sequence Send
to blast |
MESPNLQMDT SYGPSCLEGR KTWKMTEAEA GIIGGISDFL LIDDLLDFSN EEIAAPIGEK 60
CSDANGADSS TVTDTAKMAR TMLSCNNDSL LDNRRSSHIS NAVSTDIKAH NSPGDLCVSC 120
DDLAELEWLS NFVEDSFSTG NVPTEITHHV HDSGKGSSNC ILEILRVPSR ARSKRSRAPV 180
CNWVSRILNS PSSSASIVYQ NGSTSSESSE QAGGAESLFT NTNKLSKTKT SHVTSKKKGA 240
VQVDHPGIQV RKCSHCATQK TPQWRAGPEG PKTLCNACGV RFKSGRLLPE YRPAASPTFV 300
GNQHSNSHRK VIEMRRQKLN EIDEKPDAHI EKLVQGLIQY NYSSEQHSDL GKSDDDECLL 360
HNNINTGEDL NFCRQIV
|
| Expression --
Description ? help
Back to Top |
| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in the vascular cylinder of roots. Expressed in the differentiation zone of the root stele. {ECO:0000269|PubMed:25265867}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}. |
