PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl015619 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 424aa MW: 47731.4 Da PI: 4.4537 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171.7 | 2.2e-53 | 6 | 136 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 lppGfrFhPtdeel+ +yLk k+++ + +vi+evd+y++ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatg+d++v+s + Pgl015619 6 LPPGFRFHPTDEELIFNYLKVKLNHGLkAAEVKVIPEVDLYRCEPWDLPeKsFLPNTDMEWYFFSPRDRKYPNGSRTNRATEAGYWKATGRDRKVYS-RA 104 79********************988763444478**************95334455778**************************************.88 PP NAM 98 elvglkktLvfykgrapkgektdWvmheyrle 129 ++ g+kktLvfy+grap+ge+tdWvmheyrle Pgl015619 105 STLGIKKTLVFYRGRAPQGERTDWVMHEYRLE 136 99****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.01E-60 | 3 | 158 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.711 | 6 | 158 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.3E-27 | 7 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 424 aa Download sequence Send to blast |
MGTFALPPGF RFHPTDEELI FNYLKVKLNH GLKAAEVKVI PEVDLYRCEP WDLPEKSFLP 60 NTDMEWYFFS PRDRKYPNGS RTNRATEAGY WKATGRDRKV YSRASTLGIK KTLVFYRGRA 120 PQGERTDWVM HEYRLEENEC EAGPCLQNAF VLCRVLKKSE LGVKSGEQYT APVEKGDLSL 180 TKKKPCPDYF GDIEVQSEDQ SKLVEGIGAI SNLPSKFSLR ILNDTTGDSA TVNTSLDILL 240 DDIRSNSSCV APDEDTINTQ VDAMADTPRT QREFACLPFV ESEFSQIPVD LSFSQYGVPN 300 GCLDAFFEEE GMLEEMLSAA SQDYNNSKAY HPSLGDTFAD ILNGGYIELK NLIPSIEDLE 360 HHDSCLWEVP DSLLDHEGTG IQISSDSPIL ESHQQGFLFE GTAAIRVRMQ LHKMEDSAEI 420 NEKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-50 | 4 | 158 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-50 | 4 | 158 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-50 | 4 | 158 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-50 | 4 | 158 | 15 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-50 | 4 | 158 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-50 | 4 | 158 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-50 | 4 | 158 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-50 | 4 | 158 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-50 | 4 | 158 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-50 | 4 | 158 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-50 | 4 | 158 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-50 | 4 | 158 | 18 | 168 | NAC domain-containing protein 19 |
4dul_A | 4e-50 | 4 | 158 | 15 | 165 | NAC domain-containing protein 19 |
4dul_B | 4e-50 | 4 | 158 | 15 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | B8LLW8 | 0.0 | B8LLW8_PICSI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G65910.1 | 1e-80 | NAC domain containing protein 28 |