PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl015556
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family bHLH
Protein Properties Length: 281aa    MW: 31788.5 Da    PI: 9.1149
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S55342481PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.5e-1275129155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++ +hn+ Er RR+++N  f +Lr+llP++  + ++K++  +++    +YI +Lq
  Pgl015556  75 KKLSHNAKERLRRKNLNALFGKLRSLLPHSIMNMKEKVNNPTTVSGILKYIPQLQ 129
                6789*************************999**********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.104.9E-1174133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.49374128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-1275143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.4E-1075129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.54E-875133No hitNo description
SMARTSM003532.4E-680134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 281 aa     Download sequence    Send to blast
MAALPPPEPF ESQLIMEGCE YWREVVEYSK LPSSMLEYGE QLFLSGDNVT GKSYPTKKTD  60
EKGSGFSLSD EIATKKLSHN AKERLRRKNL NALFGKLRSL LPHSIMNMKE KVNNPTTVSG  120
ILKYIPQLQR EIKTLSRQRD ELLSLRRISA QALKISPAEY HASQMVVNRL DFNQSPNGLL  180
TEVNIFAMGQ TLLVTVQTAH AAPFFSRLFL LFEEERLDVM NASTFISEEN AWHSIQVKAM  240
ESSRRLDTSA LRLKIVFLCE NNCRSLSGGY FAQKTGNCFP A
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.13e-16bHLH family protein