PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl014797 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | C3H | ||||||||
Protein Properties | Length: 132aa MW: 14461.5 Da PI: 8.7844 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 23.3 | 1.1e-07 | 9 | 29 | 7 | 27 |
SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 7 rffartGtCkyGdrCkFaHgp 27 +++++tG Ck+ ++Ck++H++ Pgl014797 9 KYYLKTGACKFDATCKYHHPR 29 79*****************96 PP | |||||||
2 | zf-CCCH | 31.7 | 2.5e-10 | 50 | 75 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++rtG Cky CkF+H++ Pgl014797 50 GEKECASYMRTGSCKYAVHCKFHHPQ 75 6789********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 10.005 | 2 | 30 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 3 | 6 | 29 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-5 | 9 | 29 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 11.479 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.04E-5 | 49 | 76 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.0E-7 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.017 | 50 | 75 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-4 | 54 | 74 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 132 aa Download sequence Send to blast |
MAEDAGVVKY YLKTGACKFD ATCKYHHPRD RNRLGGQVHM NDLGLPMCQG EKECASYMRT 60 GSCKYAVHCK FHHPQPATIV SGYASSGSPT TPASPYVHGP RLQGSPTYVP VIFSPSQGVI 120 PMLVWNNYQV SP |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021633192.1 | 2e-38 | zinc finger CCCH domain-containing protein 3-like | ||||
Swissprot | Q9SWF9 | 2e-29 | ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like | ||||
TrEMBL | A0A0D6R411 | 4e-55 | A0A0D6R411_ARACU; Uncharacterized protein | ||||
STRING | cassava4.1_026428m | 1e-37 | (Manihot esculenta) | ||||
STRING | XP_002528968.1 | 3e-37 | (Ricinus communis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 5e-31 | C3H family protein |