PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl014788 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | NAC | ||||||||
Protein Properties | Length: 133aa MW: 15041.3 Da PI: 10.1063 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.2 | 1.2e-47 | 13 | 133 | 1 | 121 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF Ptdeelvv+yL++kv +++l++ +i +vd+yk++Pw+Lp+k+ +ekewyfF++rd+ky++g+r+nra+ sgyWkatg dk++++ +++ Pgl014788 13 LPPGFRFFPTDEELVVHYLCNKVVSHPLPA-FIIGDVDLYKYDPWQLPEKALFGEKEWYFFTPRDRKYPNGSRPNRAAGSGYWKATGADKPITTCgGRKR 111 79***************************9.67***************8888899*************************************99866777 PP NAM 100 vglkktLvfykgrapkgektdW 121 vg+kk Lvfykg+apkg+kt+W Pgl014788 112 VGVKKALVFYKGKAPKGSKTNW 133 ********************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-53 | 10 | 133 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 51.717 | 13 | 133 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.5E-22 | 14 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MTQKGGLEGQ IDLPPGFRFF PTDEELVVHY LCNKVVSHPL PAFIIGDVDL YKYDPWQLPE 60 KALFGEKEWY FFTPRDRKYP NGSRPNRAAG SGYWKATGAD KPITTCGGRK RVGVKKALVF 120 YKGKAPKGSK TNW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-63 | 10 | 133 | 14 | 135 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-63 | 10 | 133 | 14 | 135 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-63 | 10 | 133 | 14 | 135 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-63 | 10 | 133 | 14 | 135 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-63 | 10 | 133 | 17 | 138 | NAC domain-containing protein 19 |
3swm_B | 3e-63 | 10 | 133 | 17 | 138 | NAC domain-containing protein 19 |
3swm_C | 3e-63 | 10 | 133 | 17 | 138 | NAC domain-containing protein 19 |
3swm_D | 3e-63 | 10 | 133 | 17 | 138 | NAC domain-containing protein 19 |
3swp_A | 3e-63 | 10 | 133 | 17 | 138 | NAC domain-containing protein 19 |
3swp_B | 3e-63 | 10 | 133 | 17 | 138 | NAC domain-containing protein 19 |
3swp_C | 3e-63 | 10 | 133 | 17 | 138 | NAC domain-containing protein 19 |
3swp_D | 3e-63 | 10 | 133 | 17 | 138 | NAC domain-containing protein 19 |
3ulx_A | 4e-63 | 1 | 133 | 3 | 133 | Stress-induced transcription factor NAC1 |
4dul_A | 3e-63 | 10 | 133 | 14 | 135 | NAC domain-containing protein 19 |
4dul_B | 3e-63 | 10 | 133 | 14 | 135 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in stems, leaf blades and callus. Weakly expressed in developing flowers. {ECO:0000269|PubMed:10660065}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:18813954, PubMed:20632034). Induced by dehydration, cold stress and methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:18813954, ECO:0000269|PubMed:20632034}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_026413001.1 | 2e-69 | NAC domain-containing protein 68-like | ||||
Swissprot | Q52QH4 | 2e-67 | NAC68_ORYSJ; NAC domain-containing protein 68 | ||||
TrEMBL | A0A0D6R3P9 | 1e-71 | A0A0D6R3P9_ARACU; Uncharacterized protein | ||||
STRING | VIT_06s0004g00020.t01 | 2e-66 | (Vitis vinifera) | ||||
STRING | XP_010257746.1 | 2e-66 | (Nelumbo nucifera) |