PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pgl014502
Organism
Picea glauca
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
Family MIKC_MADS
Protein Properties Length: 150aa    MW: 17405 Da    PI: 10.2769
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Pgl#S25725241PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.14.1e-27959151
               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               k ien+snr+vtfskRr g++KKA ELSvLC+aeva+i+fsstg+ +e++s
  Pgl014502  9 KMIENESNRKVTFSKRRGGLFKKARELSVLCEAEVALIVFSSTGNHQEFAS 59
               68**********************************************986 PP
2K-box45.43.4e-16821491582
      K-box  15 eslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqk 82 
                 ++  ++a++k+e+e L   +R ++GedL+s +++++++Le++L+k    +R++K++l+ + +++ +k
  Pgl014502  82 DQMLSDMARIKRENEILHADLRYMMGEDLDSSDIRDMMRLEDHLDKVSGLVRKRKDKLMDNRLKKKKK 149
                4677899*******************************************************999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.389161IPR002100Transcription factor, MADS-box
SMARTSM004325.5E-38160IPR002100Transcription factor, MADS-box
CDDcd002655.15E-38274No hitNo description
SuperFamilySSF554551.19E-33286IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-26323IPR002100Transcription factor, MADS-box
PfamPF003191.4E-241157IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.26481150IPR002487Transcription factor, K-box
PfamPF014865.2E-1281149IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MGRGKIEIKM IENESNRKVT FSKRRGGLFK KARELSVLCE AEVALIVFSS TGNHQEFASS  60
SMKNILERYK ASTGIGLLDY QDQMLSDMAR IKRENEILHA DLRYMMGEDL DSSDIRDMMR  120
LEDHLDKVSG LVRKRKDKLM DNRLKKKKKX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-19169169MEF2C
5f28_B3e-19169169MEF2C
5f28_C3e-19169169MEF2C
5f28_D3e-19169169MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1132137RKRKDK
2133148KRKDKLMDNRLKKKKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expression specific for female reproductive structures: strong at the adaxial base of the cupules, where ovules will later develop, then in the outermost cell layer of the nucellus, in the inner envelope, and in the inner half of the middle envelope at late stage of ovule development. {ECO:0000269|PubMed:11862488}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019053529.12e-42PREDICTED: MADS-box protein AeAP3-2-like
SwissprotQ9XGJ41e-45GGM13_GNEGN; MADS-box protein GGM13
TrEMBLQ9SEE33e-98Q9SEE3_PICAB; MADS-box transcription factor
STRINGXP_010258808.17e-42(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-35MIKC_MADS family protein
Publications ? help Back to Top
  1. Winter KU, et al.
    MADS-box genes reveal that gnetophytes are more closely related to conifers than to flowering plants.
    Proc. Natl. Acad. Sci. U.S.A., 1999. 96(13): p. 7342-7
    [PMID:10377416]