PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Pgl013512 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Picea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 198aa MW: 22640 Da PI: 9.6079 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.9 | 2.4e-27 | 2 | 51 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krie ++ rqvtf+kR+ng+lKKA+ LSvLCdaevav+ifs++gklye++ Pgl013512 2 KRIEKTTSRQVTFCKRKNGLLKKAYALSVLCDAEVAVMIFSPSGKLYEFA 51 79***********************************************8 PP | |||||||
2 | K-box | 59 | 2e-20 | 71 | 149 | 5 | 83 |
K-box 5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 +++ ++e++ ++l++e+a+ +++i+ L++ qR+++Ge+L s+ l +L+ Le+q+e++l++iR++K+++ e+ +k+ Pgl013512 71 TTNTTKERDIQYLKREIANREERIKILESRQRKVVGEELASCALSDLNLLESQVERGLRRIRARKERISSEENAFHRKR 149 445589999***********************************************************99999988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 7.85E-29 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 27.067 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 3.20E-39 | 1 | 69 | No hit | No description |
SMART | SM00432 | 9.3E-29 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.1E-25 | 3 | 50 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 16 | 31 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.2E-16 | 31 | 52 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.1E-15 | 75 | 148 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 10.45 | 80 | 174 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MKRIEKTTSR QVTFCKRKNG LLKKAYALSV LCDAEVAVMI FSPSGKLYEF ANPSMQKMLE 60 RYEKCSEGSD TTNTTKERDI QYLKREIANR EERIKILESR QRKVVGEELA SCALSDLNLL 120 ESQVERGLRR IRARKERISS EENAFHRKRF VDPLYENGSV LATLASGLGS IQNSEVETQL 180 VIRPPSTKNL TCDYVNLV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 9e-18 | 3 | 74 | 10 | 82 | MEF2 CHIMERA |
6byy_B | 9e-18 | 3 | 74 | 10 | 82 | MEF2 CHIMERA |
6byy_C | 9e-18 | 3 | 74 | 10 | 82 | MEF2 CHIMERA |
6byy_D | 9e-18 | 3 | 74 | 10 | 82 | MEF2 CHIMERA |
6bz1_A | 8e-18 | 3 | 74 | 10 | 82 | MEF2 CHIMERA |
6bz1_B | 8e-18 | 3 | 74 | 10 | 82 | MEF2 CHIMERA |
6bz1_C | 8e-18 | 3 | 74 | 10 | 82 | MEF2 CHIMERA |
6bz1_D | 8e-18 | 3 | 74 | 10 | 82 | MEF2 CHIMERA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 128 | 135 | RRIRARKE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Pgl.28373 | 0.0 | stem |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | E1B4K8 | 1e-129 | E1B4K8_PICAB; MADS-domain transcription factor dal3 variant 2 | ||||
STRING | XP_010255589.1 | 3e-48 | (Nelumbo nucifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62165.4 | 2e-49 | AGAMOUS-like 42 |